Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• VIST: variational inference for single cell time series.

  PMID 41535949 · PMC12892444 · Genome biology · 2026 · 8 claims · 6 setups

  Full-text index only

  VIST is a VAE-based method that decomposes single-cell gene expression into time-dependent and time-independent latent components

  toy drosophila aorta lung synthetic time-course latent

• A transcriptomic atlas of Aedes aegypti reveals detailed functional organization of major body parts and gut regional specializations in sugar-fed and blood-fed adult females.

  PMID 35471187 · PMC9113746 · eLife · 2022 · 8 claims · 5 setups

  Has reproduction · 73

  Created Aegypti-Atlas, an online RNAseq resource covering Ae. aegypti body parts, gut regions, and a blood meal digestion time course

  dissected five anterior midguts rnaseq rt-qpcr

• Distinct radial glia subtypes regulate midbrain dopaminergic neuron development.

  PMID 41699318 · PMC13061605 · Nature neuroscience · 2026 · 8 claims · 8 setups

  Full-text index only

  Rgl1 is the progenitor of the mesDA neuronal lineage

  embryonic developing wa09 bulk scrna-seq ligand-receptor

• The changing face of genomics.

  PMID 15128443 · PMC416465 · Genome biology · 2004 · 8 claims · 8 setups

  Full-text index only

  Genome-wide ChIP-chip mapping of ~200 yeast transcriptional regulators across environmental conditions reveals general principles of promoter architecture and regulatory response types

  yeast drosophila zebrafish elegans chip-chip comparative insertional