Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Neural network-assisted RNA velocity imputation for empowering transcript dynamics-based analyses.

  PMID 41736867 · PMC12927306 · iScience · 2026 · 8 claims · 8 setups

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  NARVI, a deep neural network trained on expression-velocity relationships of passed genes, can impute RNA velocity for dropped genes that conventional tools (e.g., scVelo, UniTVelo) fail to calculate

  hematopoietic lung erythroid bone scrna-seq cross-validation

• Interactive analysis of single-cell trajectories in 3D space with Cell Journey.

  PMID 41773942 · PMC13042281 · GigaScience · 2026 · 7 claims · 3 setups

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  Cell Journey is an interactive platform for computing and visualizing RNA velocity-based single-cell trajectories in 3D space.

  pancreatic bone hematopoietic scrna-seq cite-seq clonal

• Development of double-positive thymocytes at single-cell resolution.

  PMID 33771202 · PMC8004397 · Genome medicine · 2021 · 7 claims · 8 setups

  Has reproduction · 86

  DP thymocytes can be classified into blast, rearrangement, and selection subtypes, distinguishable by surface markers CD2 and Ly6d

  thymocytes sorted thymocyte scrna-seq flow immunofluorescence

• Prediction of myeloid malignant cells in Fanconi anemia using machine learning.

  PMID 41557613 · PMC12818649 · PloS one · 2026 · 6 claims · 7 setups

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  A DNN classifier trained on AML scRNA-seq data accurately predicts AML-like transcriptional profiles at single-cell resolution

  bone predicted-aml healthy scrna-seq reference-based stemnet