Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Interpretable trajectory inference with single-cell linear adaptive negative-binomial expression (scLANE) testing.

  PMID 41533563 · PMC12802912 · Nucleic acids research · 2026 · 8 claims · 3 setups

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  scLANE models gene expression as a piecewise negative-binomial GLM using truncated power basis (hinge) functions with adaptively chosen knots, yielding directly interpretable multiplicative effect sizes for trajectory differential expression

  zebrafish simulated diverse trajectory simulation

• To Explore the Key Subgroup and Their Immune Microenvironment During the Formation of Coronary Plaque With scRNA-seq.

  PMID 40454289 · PMC12126265 · Cardiology research and practice · 2025 · 6 claims · 8 setups

  Has reproduction · 33

  C1 RACK1+ NK cells are a crucial subgroup for understanding coronary plaque formation, exhibiting the highest cell stemness/differentiation potential and positioned at the start of the pseudotime trajectory

  coronary scrna-seq five type single-cell doublet copy

• Androgen activity in the male embryonic hindbrain drives lethal PFA ependymoma.

  PMID 41882358 · PMC13083265 · Nature · 2026 · 8 claims · 8 setups

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  The cellular hierarchy of PFA ependymoma is less differentiated in male than in female patients

  pfa pfa-epn normal hindbrain single-cell kaplan-meier literature

• Identification and comparison of orthologous cell types from primate embryoid bodies shows limits of marker gene transferability.

  PMID 41949281 · PMC13061419 · eLife · 2026 · 7 claims · 6 setups

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  Human marker genes are less effective in macaques and vice versa, showing limited transferability of markers across species.

  ipsc-derived day integrated ipscs scrna-seq flow immunofluorescence