Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
-
Full-text index only
The distribution of SNPs in human gene regulatory regions.
PMID 16209714 · PMC1260019 · BMC genomics · 2005 · 8 claims · 6 setups
SNPs occur with higher density closer to the transcriptional start site within gene promoter regions than in further upstream regions
-
Full-text index only
Transient histone deacetylase inhibition induces cellular memory of gene expression and 3D genome folding.
PMID 41639407 · PMC12900649 · Nature genetics · 2026 · 8 claims · 8 setups
Acute HDAC inhibition (TSA pulse) induces genome-wide H3K27 hyperacetylation and reorganizes the histone modification landscape, shifting more of the genome to an active state.
-
Full-text index only
Chromatin architecture reprogramming reveals novel epigenetic dependencies in breast cancer.
PMID 41412800 · PMC12849445 · Genes & development · 2026 · 7 claims · 7 setups
H3K9 methylation and the demethylase KDM4C, through association with SWI/SNF, drive proliferation of cells fated to become endocrine-resistant via a nongenomic estrogen-mediated mechanism
-
Has reproduction · 75
Inference of RNA polymerase II transcription dynamics from chromatin immunoprecipitation time course data.
PMID 24830797 · PMC4022483 · PLoS computational biology · 2014 · 8 claims · 8 setups
A convolved Gaussian process model of pol-II occupancy across gene segments captures the transcription wave and yields estimates of transcription speed and promoter-proximal pol-II activity.