Experiments
Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).
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Has reproduction · 85
The cotranslational cycle of the ribosome-bound Hsp70 homolog Ssb.
PMID 41545346 · PMC12847954 · Nature communications · 2026 · 7 claims · 6 setups
Rpl25 (uL23) is the primary ribosomal binding site for Ssb, mediated by salt-bridge interactions between the Ssb RKKR-motif (R596/K597/K603/R604) and the Rpl25 EDD-motif (E77/D131/D134)
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Has reproduction · 68
LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq.
PMID 24709818 · PMC4079972 · Genome research · 2014 · 8 claims · 8 setups
LaSSO (Lariat Sequence Site Origin) identifies intronic lariat reads and pinpoints branch points genome-wide from RNA-seq data by considering every intronic base as a potential branch point and including all possible exon-skipping lariats.
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Full-text index only
A machine learning approach uncovers principles and determinants of eukaryotic ribosome pausing.
PMID 39423268 · PMC11488575 · Science advances · 2024 · 8 claims · 5 setups
An unsupervised ML pipeline using the extended isolation forest (EIF) algorithm can reliably detect ribosome pausing sites from noisy, coverage-biased RiboSeq data across expression levels
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Full-text index only
96 sample parallel acoustic fragmentation for high throughput next generation sequencing library preparation.
PMID 41701697 · PMC12912608 · PloS one · 2026 · 8 claims · 7 setups
Nanodroplets facilitate parallel fragmentation of up to 96 genomic DNA samples in a modified/adapted Qsonica sonication device using inexpensive PCR plates.