Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Operon information improves gene expression estimation for cDNA microarrays.

  PMID 16630355 · PMC1513396 · BMC genomics · 2006 · 7 claims · 3 setups

  Full-text index only

  A hierarchical Bayesian model that borrows expression information from other genes within the same operon improves estimation of relative transcript levels.

  simulated coli simulated cdna two-color

• Curation of over 10 000 transcriptomic studies to enable data reuse.

  PMID 33599246 · PMC7904053 · Database : the journal of biological databases and curation · 2021 · 8 claims · 6 setups

  Has reproduction · 80

  Gemma is a curated database and bioinformatics system that addresses metadata, probe annotation, and expression data inconsistencies in GEO to enable transcriptomic data reuse

  microarray curated geo microarray rna-sequencing probe-to-gene