Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Multi-species integration, alignment and annotation of single-cell RNA-seq data with CAMEX.

  PMID 41723123 · PMC13035843 · Nature communications · 2026 · 8 claims · 6 setups

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  CAMEX outperforms state-of-the-art integration methods on cross-species scRNA-seq benchmarking datasets ranging from one to eleven species

  liver ovary pancreas testis scrna-seq type

• Embeddings from language models are good learners for single-cell data analysis.

  PMID 41726097 · PMC12921509 · Patterns (New York, N.Y.) · 2026 · 8 claims · 8 setups

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  scELMo combines LLM-derived embeddings of gene and cell metadata with raw single-cell expression data via matrix operations to generate cell embeddings without pretraining a new model

  scrna-seq multi-batch diseased perturbation clustering batch cell-type