Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Neural network-assisted RNA velocity imputation for empowering transcript dynamics-based analyses.

  PMID 41736867 · PMC12927306 · iScience · 2026 · 8 claims · 8 setups

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  NARVI, a deep neural network trained on expression-velocity relationships of passed genes, can impute RNA velocity for dropped genes that conventional tools (e.g., scVelo, UniTVelo) fail to calculate

  hematopoietic lung erythroid bone scrna-seq cross-validation

• Molecular signatures of cell diversity modulated by long noncoding RNAs in the human fetal spinal cord.

  PMID 42006319 · PMC13090696 · iScience · 2026 · 8 claims · 7 setups

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  Three neural stem cell (NSC) lineages (NSC1, NSC2, NSCs) were annotated in the human fetal spinal cord

  fetal nsc2 scrna-seq scstereo velocity

• Physical and nutrient stimuli differentially modulate gut motility patterns, gut transit rate, and transcriptome in an agastric fish, the ballan wrasse.

  PMID 33571240 · PMC7877642 · PloS one · 2021 · 8 claims · 2 setups

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  Intestinal stretch generated by inert cellulose causes faster evacuation of digesta from the anterior intestine than digestible protein and lipid

  intestine bulbous time-lapse sequencing

• Single-Cell Mitochondrial Lineage Tracing Decodes Fate Decision and Spatial Clonal Architecture in Human Hematopoietic Organoids.

  PMID 41560697 · PMC13042525 · Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026 · 8 claims · 8 setups

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  Mitochondrial somatic mutations from scRNA-seq can be repurposed as endogenous genetic barcodes for lineage tracing in hPSC-derived organoids.

  hpsc hemo larry-barcoded pdgfrα+ scrna-seq mitochondrial cospar

• Bacterial reporter-paired scRNA sequencing reveals cross talk between zinc starvation and zinc toxicity in macrophage antibacterial defense.

  PMID 41802048 · PMC12993976 · Proceedings of the National Academy of Sciences of the United States of America · 2026 · 8 claims · 8 setups

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  Macrophages starve intracellular E. coli of zinc to sensitize them to subsequent zinc toxicity, coupling zinc starvation and zinc toxicity in a single antimicrobial response

  monocyte-derived hmdm zntr-dual macrophages confocal high-throughput flow

• Tachykinin signaling defines distinct populations of glia in the enteric nervous system.

  PMID 41512855 · PMC12832054 · Neuron · 2026 · 8 claims · 8 setups

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  Mucosal and muscularis glia are transcriptionally distinct populations, with mucosal glia resembling microglia and muscularis glia resembling satellite glia/astrocytes

  ileum gfp+ intestinal intestine bulk scrna-seq bayesprism

• Dissecting gene regulatory networks governing human cortical cell fate.

  PMID 41565813 · PMC12999477 · Nature · 2026 · 8 claims · 6 setups

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  ZNF219, a previously uncharacterized transcription factor, represses neural differentiation in human cortical radial glia

  cortical rhesus single-cell scrna-seq immunocytochemistry

• In vivo induction of activin A-producing alveolar macrophages supports the progression of lung cell carcinoma.

  PMID 36650150 · PMC9845242 · Nature communications · 2023 · 8 claims · 8 setups

  Has reproduction · 96

  AMs accumulate in human lung cancer tissue and support cancer cell proliferation, contributing to unfavourable outcome

  normal llc lung c57bl immunohistochemistry count flow