Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Learning collective multicellular dynamics with an interacting mean field neural SDE model.

  PMID 41564117 · PMC12854464 · PLoS computational biology · 2026 · 7 claims · 5 setups

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  scIMF models multicellular dynamics as interacting diffusion processes using a McKean-Vlasov SDE solved via Neural SDE, with a Transformer-based cell-wise attention mechanism approximating the distribution-dependent drift term

  zebrafish embryonic pancreatic temporal umap cell-wise

• Interpretable trajectory inference with single-cell linear adaptive negative-binomial expression (scLANE) testing.

  PMID 41533563 · PMC12802912 · Nucleic acids research · 2026 · 8 claims · 3 setups

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  scLANE models gene expression as a piecewise negative-binomial GLM using truncated power basis (hinge) functions with adaptively chosen knots, yielding directly interpretable multiplicative effect sizes for trajectory differential expression

  zebrafish simulated diverse trajectory simulation