Experiments

Searchable full-text extractions: founding hypothesis, core claims, experimental setups, key results and statistics — pulled out of each paper as structure. Search a cell line, an assay or an entity (e.g. HUH7) and find every paper that worked with it. This corpus stands on its own: most entries carry no reproduction assessment (yet).

• Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows.

  PMID 36810800 · PMC9944229 · GigaScience · 2022 · 8 claims · 5 setups

  Has reproduction · 50

  Yevis is a system that builds a workflow registry which automatically validates and tests workflows prior to publication, ensuring they are 'reusable with confidence'.

  github submitter's zenodo yevis-based workflow file trs

• Fast, accurate, and racially unbiased pan-cancer tumor-only variant calling with tabular machine learning.

  PMID 36611079 · PMC9825621 · NPJ precision oncology · 2023 · 7 claims · 8 setups

  Has reproduction

  Tabular ML classifiers (TabNet, XGBoost, LightGBM) trained on tumor-only-derived features achieve state-of-the-art somatic vs germline classification, with AUC>94% on TCGA holdout and AUC>85% on metastatic melanoma.

  tcga metastatic tumor-only whole-exome wes copy-number