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27 matching publication(s)
Statistical framework for calling allelic imbalance in high-throughput sequencing data.
PMID 39966391 · Nat Commun · 2025
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89/100
Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in DSRCTs.
PMID 38781959 · Cell Rep Med · 2024
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76/100
DNA binding analysis of rare variants in homeodomains reveals homeodomain specificity-determining residues.
PMID 38600112 · Nat Commun · 2024
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93/100
A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest.
PMID 37277355 · Nat Commun · 2023
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94/100
Gene Regulatory Interactions at Lamina-Associated Domains.⚑
PMID 36833261 · Genes (Basel) · 2023
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31/100
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maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks.
PMID 36719906 · PLoS Comput Biol · 2023
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98/100
Extensive androgen receptor enhancer heterogeneity in primary prostate cancers underlies transcriptional diversity and metastatic potential.
PMID 36450752 · Nat Commun · 2022
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70/100
Dioxin-elicited decrease in cobalamin redirects propionyl-CoA metabolism to the β-oxidation-like pathway resulting in acrylyl-CoA conjugate buildup.
PMID 35931118 · J Biol Chem · 2022
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73/100
Transcriptional regulation and chromatin architecture maintenance are decoupled functions at the Sox2 locus.
PMID 35710138 · Genes Dev · 2022
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81/100
RegulonDB 11.0: Comprehensive high-throughput datasets on transcriptional regulation in Escherichia coli K-12.⚑
PMID 35584008 · Microb Genom · 2022
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61/100
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Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory data.
PMID 35473573 · Genome Biol · 2022
not yet assessed
Prospects of telomere-to-telomere assembly in barley: Analysis of sequence gaps in the MorexV3 reference genome.
PMID 35338551 · Plant Biotechnol J · 2022
71/100
Identification of new ETV6 modulators through a high-throughput functional screening.
PMID 35198911 · iScience · 2022
68/100
SEAseq: a portable and cloud-based chromatin occupancy analysis suite.
PMID 35193506 · BMC Bioinformatics · 2022
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94/100
An archaeal histone-like protein regulates gene expression in response to salt stress.
PMID 34883507 · Nucleic Acids Res · 2021
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94/100
A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells.
PMID 34426512 · Genome Res · 2021
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57/100
Reactivation of a developmentally silenced embryonic globin gene.
PMID 34290235 · Nat Commun · 2021
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85/100
Epigenome screening highlights that JMJD6 confers an epigenetic vulnerability and mediates sunitinib sensitivity in renal cell carcinoma.
PMID 33634984 · Clin Transl Med · 2021
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85/100
Prediction of Alzheimer's disease-specific phospholipase c gamma-1 SNV by deep learning-based approach for high-throughput screening.
PMID 33397809 · Proc Natl Acad Sci U S A · 2021
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48/100
Enhancer Reprogramming Confers Dependence on Glycolysis and IGF Signaling in KMT2D Mutant Melanoma.
PMID 33086062 · Cell Rep · 2020
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59/100
Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells.⚑
PMID 32596448 · Sci Adv · 2020
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57/100
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Cohesion is established during DNA replication utilising chromosome associated cohesin rings as well as those loaded de novo onto nascent DNAs.
PMID 32515737 · Elife · 2020
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90/100
Spatially clustered loci with multiple enhancers are frequent targets of HIV-1 integration.
PMID 31492853 · Nat Commun · 2019
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77/100
Yap1 safeguards mouse embryonic stem cells from excessive apoptosis during differentiation.
PMID 30561326 · Elife · 2018
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50/100
Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data.
PMID 29420797 · Nucleic Acids Res · 2018
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68/100
Exposure to the widely used herbicide atrazine results in deregulation of global tissue-specific RNA transcription in the third generation and is associated wit⚑
PMID 27655631 · Nucleic Acids Res · 2016
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10/100
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