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40 matching publication(s)

Publication	Journal	Year	Score	Verdict
RAGER: A user-friendly computational platform for integrated analysis of RNA-Seq and ATAC-seq data. PMID 42172220	PLoS One	2026	63	L1 63/100
IRSN-23 gene diagnosis enhances breast cancer subtype classification and predicts response to neoadjuvant chemotherapy: new validation analyses. PMID 40128415	Breast Cancer	2025	71	L1 71/100
Differential bone morphology and hypoxia activity in skeletal metastases of ER+ and ER- breast cancer. PMID 39572705	Commun Biol	2024	68	L1 68/100
Community assessment of methods to deconvolve cellular composition from bulk gene expression. PMID 39191725	Nat Commun	2024	63	L1 63/100
Understanding the function of Pax5 in development of docetaxel-resistant neuroendocrine-like prostate cancers. PMID 39183332	Cell Death Dis	2024	69	L1 69/100
The soil microbiome modulates the sorghum root metabolome and cellular traits with a concomitant reduction of Striga infection. PMID 38537644	Cell Rep	2024	62	L1 62/100
A urine extracellular vesicle lncRNA classifier for high-grade prostate cancer and increased risk of progression: A multi-center study. ⚑ PMID 37852185	Cell Rep Med	2023	65	65/100 ⚑
Loss of CD4+ T cell-intrinsic arginase 1 accelerates Th1 response kinetics and reduces lung pathology during influenza infection. PMID 37572656	Immunity	2023	68	L1 68/100
Clinical and molecular correlation defines activity of physiological pathways in life-sustaining kidney xenotransplantation. PMID 37311769	Nat Commun	2023	69	L1 69/100
Dynamics and regulation of mitotic chromatin accessibility bookmarking at single-cell resolution. PMID 36696508	Sci Adv	2023	50	L2 50/100
Perturbation of placental protein glycosylation by endoplasmic reticulum stress promotes maladaptation of maternal hepatic glucose metabolism. PMID 36660474	iScience	2022	71	L1 71/100
Extensive androgen receptor enhancer heterogeneity in primary prostate cancers underlies transcriptional diversity and metastatic potential. PMID 36450752	Nat Commun	2022	70	L1 70/100
Global chromatin accessibility profiling analysis reveals a chronic activation state in aged muscle stem cells. PMID 36093058	iScience	2022	59	L1 59/100
Dioxin-elicited decrease in cobalamin redirects propionyl-CoA metabolism to the β-oxidation-like pathway resulting in acrylyl-CoA conjugate buildup. PMID 35931118	J Biol Chem	2022	73	L1 73/100
Identification of the stress granule transcriptome via RNA-editing in single cells and in vivo. PMID 35784648	Cell Rep Methods	2022	66	L1 66/100
Arabidopsis RBV is a conserved WD40 repeat protein that promotes microRNA biogenesis and ARGONAUTE1 loading. PMID 35260568	Nat Commun	2022	55	L1 55/100
Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients. PMID 35012625	Genome Biol	2022	68	L1 68/100
Profiling chromatin accessibility responses in human neutrophils with sensitive pathogen detection. ⚑ PMID 34145026	Life Sci Alliance	2021	54	L1 54/100 ⚑
Coding and non-coding roles of MOCCI (C15ORF48) coordinate to regulate host inflammation and immunity. PMID 33837217	Nat Commun	2021	68	L1 68/100
GAUGE-Annotated Microbial Transcriptomic Data Facilitate Parallel Mining and High-Throughput Reanalysis To Form Data-Driven Hypotheses. PMID 33758032	mSystems	2021	70	L1 70/100
Prime editing in mice reveals the essentiality of a single base in driving tissue-specific gene expression. PMID 33722289	Genome Biol	2021	66	L1 66/100
Regulatory and evolutionary adaptation of yeast to acute lethal ethanol stress. PMID 33170850	PLoS One	2020	68	L1 68/100
Enhancer Reprogramming Confers Dependence on Glycolysis and IGF Signaling in KMT2D Mutant Melanoma. PMID 33086062	Cell Rep	2020	59	L1 59/100
Trem2 promotes anti-inflammatory responses in microglia and is suppressed under pro-inflammatory conditions. PMID 32959884	Hum Mol Genet	2020	67	L1 67/100
Unveiling prognostics biomarkers of tyrosine metabolism reprogramming in liver cancer by cross-platform gene expression analyses. ⚑ PMID 32542016	PLoS One	2020	51	L1 51/100 ⚑
miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems. PMID 32374865	Nucleic Acids Res	2020	61	L1 61/100
STAT3-dependent analysis reveals PDK4 as independent predictor of recurrence in prostate cancer. PMID 32323921	Mol Syst Biol	2020	66	L1 66/100
Integrative network modeling reveals mechanisms underlying T cell exhaustion. PMID 32024856	Sci Rep	2020	59	L1 59/100
Regulatory Noncoding Small RNAs Are Diverse and Abundant in an Extremophilic Microbial Community. ⚑ PMID 32019831	mSystems	2020	57	L1 57/100 ⚑
Transcriptomic profiling of skeletal muscle adaptations to exercise and inactivity. PMID 31980607	Nat Commun	2020	52	L1 52/100
Automatic discovery of 100-miRNA signature for cancer classification using ensemble feature selection. PMID 31533612	BMC Bioinformatics	2019	69	L1 69/100
Wx: a neural network-based feature selection algorithm for transcriptomic data. PMID 31324856	Sci Rep	2019	50	L1 50/100
Core transcriptional signatures of phase change in the migratory locust. ⚑ PMID 31292921	Protein Cell	2019	60	L1 60/100 ⚑
GREIN: An Interactive Web Platform for Re-analyzing GEO RNA-seq Data. PMID 31110304	Sci Rep	2019	73	L1 73/100
Genome-wide screening of potential RNase Y-processed mRNAs in the M49 serotype Streptococcus pyogenes NZ131. ⚑ PMID 29900693	Microbiologyopen	2018	57	L1 57/100 ⚑
Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data. PMID 29420797	Nucleic Acids Res	2018	68	L1 68/100
Proteogenomic analysis prioritises functional single nucleotide variants in cancer samples. ⚑ PMID 29221171	Oncotarget	2017	73	73/100 ⚑
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study. PMID 27583132	F1000Res	2016	74	L1 74/100
Spatial organization shapes the turnover of a bacterial transcriptome. PMID 27198188	Elife	2016	71	L1 71/100
Transcriptome analysis provides insights into the regulatory function of alternative splicing in antiviral immunity in grass carp (Ctenopharyngodon idella). ⚑ PMID 26248502	Sci Rep	2015	70	L1 70/100 ⚑