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45 matching publication(s)

Publication	Journal	Year	Score	Verdict
Enriched domain detector: a program for detection of wide genomic enrichment domains robust against local variations. PMID 24782521	Nucleic Acids Res	2014	79	L1 79/100
Metatranscriptomics From a Small Aquatic System: Microeukaryotic Community Functions Through the Diurnal Cycle. PMID 32523568	Front Microbiol	2020	97	L1 97/100
Histone deacetylase SIRT6 regulates tryptophan catabolism and prevents metabolite imbalance associated with neurodegeneration. PMID 41345108	Nat Commun	2025	93	L1 93/100
Statistical framework for calling allelic imbalance in high-throughput sequencing data. PMID 39966391	Nat Commun	2025	89	L1 89/100
Community assessment of methods to deconvolve cellular composition from bulk gene expression. PMID 39191725	Nat Commun	2024	63	L1 63/100
Understanding the function of Pax5 in development of docetaxel-resistant neuroendocrine-like prostate cancers. PMID 39183332	Cell Death Dis	2024	69	L1 69/100
A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length. PMID 38638702	NAR Genom Bioinform	2024	98	98/100
The soil microbiome modulates the sorghum root metabolome and cellular traits with a concomitant reduction of Striga infection. PMID 38537644	Cell Rep	2024	62	L1 62/100
Single-cell transcriptomics and chromatin accessibility profiling elucidate the kidney-protective mechanism of mineralocorticoid receptor antagonists. PMID 37906287	J Clin Invest	2024	95	L1 95/100
Mural cell-derived chemokines provide a protective niche to safeguard vascular macrophages and limit chronic inflammation. PMID 37652021	Immunity	2023	83	L1 83/100
Loss of CD4+ T cell-intrinsic arginase 1 accelerates Th1 response kinetics and reduces lung pathology during influenza infection. PMID 37572656	Immunity	2023	68	L1 68/100
Genetics of circulating inflammatory proteins identifies drivers of immune-mediated disease risk and therapeutic targets. PMID 37563310	Nat Immunol	2023	93	L1 93/100
A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest. PMID 37277355	Nat Commun	2023	94	L1 94/100
Transcriptomic data meta-analysis reveals common and injury model specific gene expression changes in the regenerating zebrafish heart. PMID 37012284	Sci Rep	2023	90	L2 90/100
Gene Regulatory Interactions at Lamina-Associated Domains. ⚑ PMID 36833261	Genes (Basel)	2023	31	L1 31/100 ⚑
Critical Role for the Human Cytomegalovirus Major Immediate Early Proteins in Recruitment of RNA Polymerase II and H3K27Ac To an Enhancer-Like Element in Ori PMID 36645269	Microbiol Spectr	2023	93	93/100
Perturbation of placental protein glycosylation by endoplasmic reticulum stress promotes maladaptation of maternal hepatic glucose metabolism. PMID 36660474	iScience	2022	71	L1 71/100
Extensive androgen receptor enhancer heterogeneity in primary prostate cancers underlies transcriptional diversity and metastatic potential. PMID 36450752	Nat Commun	2022	70	L1 70/100
Identification of the stress granule transcriptome via RNA-editing in single cells and in vivo. PMID 35784648	Cell Rep Methods	2022	66	L1 66/100
Reactive astrocytes acquire neuroprotective as well as deleterious signatures in response to Tau and Aß pathology. PMID 35013236	Nat Commun	2022	84	L1 84/100
Systems Analysis Reveals Ageing-Related Perturbations in Retinoids and Sex Hormones in Alzheimer's and Parkinson's Diseases. PMID 34680427	Biomedicines	2021	75	L1 75/100
Antigen and checkpoint receptor engagement recalibrates T cell receptor signal strength. ⚑ PMID 34534438	Immunity	2021	37	L1 37/100 ⚑
Vaccine-induced ICOS+CD38+ circulating Tfh are sensitive biosensors of age-related changes in inflammatory pathway PMID 34095875	Cell Rep Med	2021	88	L1 88/100
Genomic regions and signaling pathways associated with indicator traits for feed efficiency in juvenile Atlantic salmon (Salmo salar). PMID 33158415	Genet Sel Evol	2020	85	L1 85/100
Trem2 promotes anti-inflammatory responses in microglia and is suppressed under pro-inflammatory conditions. PMID 32959884	Hum Mol Genet	2020	67	L1 67/100
Synergism between IL7R and CXCR4 drives BCR-ABL induced transformation in Philadelphia chromosome-positive acute lymphoblastic leukemia. PMID 32581241	Nat Commun	2020	92	L1 92/100
miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems. PMID 32374865	Nucleic Acids Res	2020	61	L1 61/100
STAT3-dependent analysis reveals PDK4 as independent predictor of recurrence in prostate cancer. PMID 32323921	Mol Syst Biol	2020	66	L1 66/100
Integrative network modeling reveals mechanisms underlying T cell exhaustion. PMID 32024856	Sci Rep	2020	59	L1 59/100
Transcriptomic profiling of skeletal muscle adaptations to exercise and inactivity. PMID 31980607	Nat Commun	2020	52	L1 52/100
From bud formation to flowering: transcriptomic state defines the cherry developmental phases of sweet cherry bud dormancy. PMID 31830909	BMC Genomics	2019	88	L1 88/100
mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations. PMID 31799603	Nucleic Acids Res	2020	89	L1 89/100
Dynamic reversal of random X-Chromosome inactivation during iPSC reprogramming. PMID 31515287	Genome Res	2019	75	L1 75/100
Automatic discovery of 100-miRNA signature for cancer classification using ensemble feature selection. PMID 31533612	BMC Bioinformatics	2019	69	L1 69/100
Spatially clustered loci with multiple enhancers are frequent targets of HIV-1 integration. PMID 31492853	Nat Commun	2019	77	L1 77/100
sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression. PMID 31114926	Nucleic Acids Res	2019	—	not yet assessed
Repression of Divergent Noncoding Transcription by a Sequence-Specific Transcription Factor. PMID 30576656	Mol Cell	2018	—	L1 No data access
Single-Cell Sequencing of iPSC-Dopamine Neurons Reconstructs Disease Progression and Identifies HDAC4 as a Regulator of Parkinson Cell Phenotypes. ⚑ PMID 30503143	Cell Stem Cell	2018	30	L1 30/100 ⚑
Firefly genomes illuminate parallel origins of bioluminescence in beetles. PMID 30324905	Elife	2018	93	L1 93/100
Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation. PMID 29783948	BMC Genomics	2018	85	L1 85/100
Benefit from decline: the primary transcriptome of Alteromonas macleodii str. Te101 during Trichodesmium demise. ⚑ PMID 29335641	ISME J	2018	—	L1 No data access ⚑
Viral Diagnostics in Plants Using Next Generation Sequencing: Computational Analysis in Practice. PMID 29123534	Front Plant Sci	2017	100	L1 100/100
Exposure to the widely used herbicide atrazine results in deregulation of global tissue-specific RNA transcription in the third generation and is associated wit ⚑ PMID 27655631	Nucleic Acids Res	2016	10	L1 10/100 ⚑
Cell Specific eQTL Analysis without Sorting Cells. PMID 25955312	PLoS Genet	2015	90	L1 90/100
Conservation and losses of non-coding RNAs in avian genomes. PMID 25822729	PLoS One	2015	100	L1 100/100