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40 matching publication(s)

Publication	Journal	Year	Score	Verdict
Alginate oligosaccharides improve germ cell development and testicular microenvironment to rescue busulfan disrupted spermatogenesis. PMID 32194870	Theranostics	2020	79	L1 79/100
RAGER: A user-friendly computational platform for integrated analysis of RNA-Seq and ATAC-seq data. PMID 42172220	PLoS One	2026	63	L1 63/100
Protocol for transcriptomic and epigenomic analysis of JAK inhibitor sensitivity in IFN-γ-primed human macrophages using ATAC-seq and RNA-seq. PMID 41313685	STAR Protoc	2025	85	L1 85/100
IRSN-23 gene diagnosis enhances breast cancer subtype classification and predicts response to neoadjuvant chemotherapy: new validation analyses. PMID 40128415	Breast Cancer	2025	71	L1 71/100
Community assessment of methods to deconvolve cellular composition from bulk gene expression. PMID 39191725	Nat Commun	2024	63	L1 63/100
Machine learning-based identification of biomarkers and drugs in immunologically cold and hot pancreatic adenocarcinomas. PMID 39152432	J Transl Med	2024	42	L1 42/100
Chromosome-level genome of the long-tailed marine-living ornate spiny lobster, Panulirus ornatus. PMID 38909031	Sci Data	2024	80	L1 80/100
Decoding the tumor microenvironment and molecular mechanism: unraveling cervical cancer subpopulations and prognostic signatures through scRNA-Seq and bulk RNA- PMID 38482016	Front Immunol	2024	80	L1 80/100
Transcriptomic and physiological analysis of atractylodes chinensis in response to drought stress reveals the putative genes related to sesquiterpenoid biosynth PMID 38317086	BMC Plant Biol	2024	78	L1 78/100
A urine extracellular vesicle lncRNA classifier for high-grade prostate cancer and increased risk of progression: A multi-center study. ⚑ PMID 37852185	Cell Rep Med	2023	65	65/100 ⚑
Dynamics and regulation of mitotic chromatin accessibility bookmarking at single-cell resolution. PMID 36696508	Sci Adv	2023	50	L2 50/100
In vivo induction of activin A-producing alveolar macrophages supports the progression of lung cell carcinoma. PMID 36650150	Nat Commun	2023	96	L1 96/100
Recurrent RNA edits in human preimplantation potentially enhance maternal mRNA clearance. PMID 36543858	Commun Biol	2022	100	L1 100/100
Global chromatin accessibility profiling analysis reveals a chronic activation state in aged muscle stem cells. PMID 36093058	iScience	2022	59	L1 59/100
Arabidopsis RBV is a conserved WD40 repeat protein that promotes microRNA biogenesis and ARGONAUTE1 loading. PMID 35260568	Nat Commun	2022	55	L1 55/100
Effect of PAIP1 on the metastatic potential and prognostic significance in oral squamous cell carcinoma. ⚑ PMID 35153296	Int J Oral Sci	2022	10	L1 10/100 ⚑
Transcriptomic-Based Quantification of the Epithelial-Hybrid-Mesenchymal Spectrum across Biological Contexts. PMID 35053177	Biomolecules	2021	100	L1 100/100
The butyrophilin 1a1 knockout mouse revisited: Ablation of Btn1a1 leads to concurrent cell death and renewal in the mammary epithelium during lactation. PMID 34938960	FASEB Bioadv	2021	98	L1 98/100
Population differentiation and epidemic tracking of Bursaphelenchus xylophilus in China based on chromosome-level assembly and whole-genome sequencing data. ⚑ PMID 34839581	Pest Manag Sci	2021	44	L1 44/100 ⚑
Systems Analysis Reveals Ageing-Related Perturbations in Retinoids and Sex Hormones in Alzheimer's and Parkinson's Diseases. PMID 34680427	Biomedicines	2021	75	L1 75/100
Pathway signatures derived from on-treatment tumor specimens predict response to anti-PD1 blockade in metastatic melanoma. PMID 34654806	Nat Commun	2021	100	L1 100/100
miRbiom: Machine-learning on Bayesian causal nets of RBP-miRNA interactions successfully predicts miRNA profiles. PMID 34637468	PLoS One	2021	100	L1 100/100
PredTAD: A machine learning framework that models 3D chromatin organization alterations leading to oncogene dysregulation in breast cancer cell lines. PMID 34093998	Comput Struct Biotechnol J	2021	77	L1 77/100
Integration of Dual Stress Transcriptomes and Major QTLs from a Pair of Genotypes Contrasting for Drought and Chronic Nitrogen Starvation Identifies Key Stress ⚑ PMID 34089405	Rice (N Y)	2021	43	L1 43/100 ⚑
Coding and non-coding roles of MOCCI (C15ORF48) coordinate to regulate host inflammation and immunity. PMID 33837217	Nat Commun	2021	68	L1 68/100
Topological signatures in regulatory network enable phenotypic heterogeneity in small cell lung cancer. PMID 33729159	Elife	2021	94	L1 94/100
Epigenome screening highlights that JMJD6 confers an epigenetic vulnerability and mediates sunitinib sensitivity in renal cell carcinoma. PMID 33634984	Clin Transl Med	2021	85	L1 85/100
Indoleamine 2, 3-Dioxygenase 1 and CD8 Expression Profiling Revealed an Immunological Subtype of Colon Cancer With a Poor Prognosis. ⚑ PMID 33425745	Front Oncol	2020	48	L1 48/100 ⚑
Prediction of Alzheimer's disease-specific phospholipase c gamma-1 SNV by deep learning-based approach for high-throughput screening. PMID 33397809	Proc Natl Acad Sci U S A	2021	48	L1 48/100
Evaluating Distribution and Prognostic Value of New Tumor-Infiltrating Lymphocytes in HCC Based on a scRNA-Seq Study With CIBERSORTx. PMID 33043022	Front Med (Lausanne)	2020	78	L1 78/100
Wx: a neural network-based feature selection algorithm for transcriptomic data. PMID 31324856	Sci Rep	2019	50	L1 50/100
Core transcriptional signatures of phase change in the migratory locust. ⚑ PMID 31292921	Protein Cell	2019	60	L1 60/100 ⚑
DNA demethylation is associated with malignant progression of lower-grade gliomas. PMID 30760837	Sci Rep	2019	—	L1 No data access
Firefly genomes illuminate parallel origins of bioluminescence in beetles. PMID 30324905	Elife	2018	93	L1 93/100
De novo transcriptomic analysis of leaf and fruit tissue of Cornus officinalis using Illumina platform. ⚑ PMID 29451882	PLoS One	2018	45	L1 45/100 ⚑
Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data. PMID 29420797	Nucleic Acids Res	2018	68	L1 68/100
Benefit from decline: the primary transcriptome of Alteromonas macleodii str. Te101 during Trichodesmium demise. ⚑ PMID 29335641	ISME J	2018	—	L1 No data access ⚑
Genome-wide identification of conserved and novel microRNAs in one bud and two tender leaves of tea plant (Camellia sinensis) by small RNA sequencing, microarra PMID 29157210	BMC Plant Biol	2017	91	L1 91/100
Transcriptome analysis provides insights into the regulatory function of alternative splicing in antiviral immunity in grass carp (Ctenopharyngodon idella). ⚑ PMID 26248502	Sci Rep	2015	70	L1 70/100 ⚑
Cell Specific eQTL Analysis without Sorting Cells. PMID 25955312	PLoS Genet	2015	90	L1 90/100