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39 matching publication(s)

Publication	Journal	Year	Score	Verdict
Free circular introns with an unusual branchpoint in neuronal projections. PMID 31697236	Elife	2019	99	L1 99/100
COVID-19 lung disease shares driver AT2 cytopathic features with Idiopathic pulmonary fibrosis. PMID 35870428	EBioMedicine	2022	85	L1 85/100
Targeting the epigenome and the integrated stress response to normalize colorectal cancer subclonal plasticity and progression. PMID 41963303	Cell Death Dis	2026	68	L1 68/100
Identity rather than 3D position informs splicing of rare introns in the human genome. PMID 41561379	iScience	2025	98	L1 98/100
A Meta-Analysis of the Effects of Acute Sleep Deprivation on the Cortical Transcriptome in Rodent Models. PMID 41031900	J Sleep Res	2025	96	L1 96/100
Cell type differences in human cytomegalovirus transcription and epigenetic regulation with insights into major immediate-early enhancer-promoter control. PMID 40758707	PLoS Pathog	2025	90	90/100
Statistical framework for calling allelic imbalance in high-throughput sequencing data. PMID 39966391	Nat Commun	2025	89	L1 89/100
Community assessment of methods to deconvolve cellular composition from bulk gene expression. PMID 39191725	Nat Commun	2024	63	L1 63/100
Understanding the function of Pax5 in development of docetaxel-resistant neuroendocrine-like prostate cancers. PMID 39183332	Cell Death Dis	2024	69	L1 69/100
The soil microbiome modulates the sorghum root metabolome and cellular traits with a concomitant reduction of Striga infection. PMID 38537644	Cell Rep	2024	62	L1 62/100
Mural cell-derived chemokines provide a protective niche to safeguard vascular macrophages and limit chronic inflammation. PMID 37652021	Immunity	2023	83	L1 83/100
Loss of CD4+ T cell-intrinsic arginase 1 accelerates Th1 response kinetics and reduces lung pathology during influenza infection. PMID 37572656	Immunity	2023	68	L1 68/100
Genetics of circulating inflammatory proteins identifies drivers of immune-mediated disease risk and therapeutic targets. PMID 37563310	Nat Immunol	2023	93	L1 93/100
Dynamics and regulation of mitotic chromatin accessibility bookmarking at single-cell resolution. PMID 36696508	Sci Adv	2023	50	L2 50/100
Effect of PAIP1 on the metastatic potential and prognostic significance in oral squamous cell carcinoma. ⚑ PMID 35153296	Int J Oral Sci	2022	10	L1 10/100 ⚑
Transcriptomic-Based Quantification of the Epithelial-Hybrid-Mesenchymal Spectrum across Biological Contexts. PMID 35053177	Biomolecules	2021	100	L1 100/100
Reactive astrocytes acquire neuroprotective as well as deleterious signatures in response to Tau and Aß pathology. PMID 35013236	Nat Commun	2022	84	L1 84/100
Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients. PMID 35012625	Genome Biol	2022	68	L1 68/100
Tbx5 drives Aldh1a2 expression to regulate a RA-Hedgehog-Wnt gene regulatory network coordinating cardiopulmonary development. PMID 34643182	Elife	2021	84	L1 84/100
PredTAD: A machine learning framework that models 3D chromatin organization alterations leading to oncogene dysregulation in breast cancer cell lines. PMID 34093998	Comput Struct Biotechnol J	2021	77	L1 77/100
Co-regulation and function of FOXM1/RHNO1 bidirectional genes in cancer. PMID 33890574	Elife	2021	76	L1 76/100
Coding and non-coding roles of MOCCI (C15ORF48) coordinate to regulate host inflammation and immunity. PMID 33837217	Nat Commun	2021	68	L1 68/100
Generic injuries are sufficient to induce ectopic Wnt organizers in Hydra. PMID 33779545	Elife	2021	100	L1 100/100
Prime editing in mice reveals the essentiality of a single base in driving tissue-specific gene expression. PMID 33722289	Genome Biol	2021	66	L1 66/100
Prediction of Alzheimer's disease-specific phospholipase c gamma-1 SNV by deep learning-based approach for high-throughput screening. PMID 33397809	Proc Natl Acad Sci U S A	2021	48	L1 48/100
Regulatory and evolutionary adaptation of yeast to acute lethal ethanol stress. PMID 33170850	PLoS One	2020	68	L1 68/100
Enhancer Reprogramming Confers Dependence on Glycolysis and IGF Signaling in KMT2D Mutant Melanoma. PMID 33086062	Cell Rep	2020	59	L1 59/100
Synergism between IL7R and CXCR4 drives BCR-ABL induced transformation in Philadelphia chromosome-positive acute lymphoblastic leukemia. PMID 32581241	Nat Commun	2020	92	L1 92/100
miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems. PMID 32374865	Nucleic Acids Res	2020	61	L1 61/100
Regulatory Noncoding Small RNAs Are Diverse and Abundant in an Extremophilic Microbial Community. ⚑ PMID 32019831	mSystems	2020	57	L1 57/100 ⚑
PDGFRA defines the mesenchymal stem cell Kaposi's sarcoma progenitors by enabling KSHV oncogenesis in an angiogenic environment. PMID 31881074	PLoS Pathog	2019	85	L1 85/100
Translation affects mRNA stability in a codon-dependent manner in human cells. PMID 31012849	Elife	2019	87	L1 87/100
Firefly genomes illuminate parallel origins of bioluminescence in beetles. PMID 30324905	Elife	2018	93	L1 93/100
Genome-wide screening of potential RNase Y-processed mRNAs in the M49 serotype Streptococcus pyogenes NZ131. ⚑ PMID 29900693	Microbiologyopen	2018	57	L1 57/100 ⚑
Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data. PMID 29420797	Nucleic Acids Res	2018	68	L1 68/100
Exposure to the widely used herbicide atrazine results in deregulation of global tissue-specific RNA transcription in the third generation and is associated wit ⚑ PMID 27655631	Nucleic Acids Res	2016	10	L1 10/100 ⚑
Spatial organization shapes the turnover of a bacterial transcriptome. PMID 27198188	Elife	2016	71	L1 71/100
Cell Specific eQTL Analysis without Sorting Cells. PMID 25955312	PLoS Genet	2015	90	L1 90/100
Conservation and losses of non-coding RNAs in avian genomes. PMID 25822729	PLoS One	2015	100	L1 100/100