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122 matching publication(s)
Enriched domain detector: a program for detection of wide genomic enrichment domains robust against local variations.
PMID 24782521 · Nucleic Acids Res · 2014
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Free circular introns with an unusual branchpoint in neuronal projections.
PMID 31697236 · Elife · 2019
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Metatranscriptomics From a Small Aquatic System: Microeukaryotic Community Functions Through the Diurnal Cycle.
PMID 32523568 · Front Microbiol · 2020
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COVID-19 lung disease shares driver AT2 cytopathic features with Idiopathic pulmonary fibrosis.
PMID 35870428 · EBioMedicine · 2022
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85/100
Alginate oligosaccharides improve germ cell development and testicular microenvironment to rescue busulfan disrupted spermatogenesis.
PMID 32194870 · Theranostics · 2020
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RAGER: A user-friendly computational platform for integrated analysis of RNA-Seq and ATAC-seq data.
PMID 42172220 · PLoS One · 2026
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Targeting the epigenome and the integrated stress response to normalize colorectal cancer subclonal plasticity and progression.
PMID 41963303 · Cell Death Dis · 2026
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Identity rather than 3D position informs splicing of rare introns in the human genome.
PMID 41561379 · iScience · 2025
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Protocol for transcriptomic and epigenomic analysis of JAK inhibitor sensitivity in IFN-γ-primed human macrophages using ATAC-seq and RNA-seq.
PMID 41313685 · STAR Protoc · 2025
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A Meta-Analysis of the Effects of Acute Sleep Deprivation on the Cortical Transcriptome in Rodent Models.
PMID 41031900 · J Sleep Res · 2025
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Cell type differences in human cytomegalovirus transcription and epigenetic regulation with insights into major immediate-early enhancer-promoter control.
PMID 40758707 · PLoS Pathog · 2025
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IRSN-23 gene diagnosis enhances breast cancer subtype classification and predicts response to neoadjuvant chemotherapy: new validation analyses.
PMID 40128415 · Breast Cancer · 2025
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Statistical framework for calling allelic imbalance in high-throughput sequencing data.
PMID 39966391 · Nat Commun · 2025
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Differential bone morphology and hypoxia activity in skeletal metastases of ER+ and ER- breast cancer.
PMID 39572705 · Commun Biol · 2024
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Macrophages on the run: Exercise balances macrophage polarization for improved health.
PMID 39476967 · Mol Metab · 2024
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Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals.⚑
PMID 39418301 · PLoS Comput Biol · 2024
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Community assessment of methods to deconvolve cellular composition from bulk gene expression.
PMID 39191725 · Nat Commun · 2024
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Understanding the function of Pax5 in development of docetaxel-resistant neuroendocrine-like prostate cancers.
PMID 39183332 · Cell Death Dis · 2024
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Machine learning-based identification of biomarkers and drugs in immunologically cold and hot pancreatic adenocarcinomas.
PMID 39152432 · J Transl Med · 2024
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Chromosome-level genome of the long-tailed marine-living ornate spiny lobster, Panulirus ornatus.
PMID 38909031 · Sci Data · 2024
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A data-driven estimation of the ribosome drop-off rate in S. cerevisiae reveals a correlation with the genes length.
PMID 38638702 · NAR Genom Bioinform · 2024
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The soil microbiome modulates the sorghum root metabolome and cellular traits with a concomitant reduction of Striga infection.
PMID 38537644 · Cell Rep · 2024
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Decoding the tumor microenvironment and molecular mechanism: unraveling cervical cancer subpopulations and prognostic signatures through scRNA-Seq and bulk RNA-
PMID 38482016 · Front Immunol · 2024
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Transcriptomic and physiological analysis of atractylodes chinensis in response to drought stress reveals the putative genes related to sesquiterpenoid biosynth
PMID 38317086 · BMC Plant Biol · 2024
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Single-cell transcriptomics and chromatin accessibility profiling elucidate the kidney-protective mechanism of mineralocorticoid receptor antagonists.
PMID 37906287 · J Clin Invest · 2024
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A urine extracellular vesicle lncRNA classifier for high-grade prostate cancer and increased risk of progression: A multi-center study.⚑
PMID 37852185 · Cell Rep Med · 2023
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Mural cell-derived chemokines provide a protective niche to safeguard vascular macrophages and limit chronic inflammation.
PMID 37652021 · Immunity · 2023
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Loss of CD4+ T cell-intrinsic arginase 1 accelerates Th1 response kinetics and reduces lung pathology during influenza infection.
PMID 37572656 · Immunity · 2023
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Genetics of circulating inflammatory proteins identifies drivers of immune-mediated disease risk and therapeutic targets.
PMID 37563310 · Nat Immunol · 2023
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Clinical and molecular correlation defines activity of physiological pathways in life-sustaining kidney xenotransplantation.
PMID 37311769 · Nat Commun · 2023
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A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest.
PMID 37277355 · Nat Commun · 2023
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iBRIDGE: A Data Integration Method to Identify Inflamed Tumors from Single-cell RNA-Seq Data and Differentiate Cell Type-Specific Markers of Immune-Cell Infiltr
PMID 37023414 · Cancer Immunol Res · 2023
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Transcriptomic data meta-analysis reveals common and injury model specific gene expression changes in the regenerating zebrafish heart.
PMID 37012284 · Sci Rep · 2023
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Gene Regulatory Interactions at Lamina-Associated Domains.⚑
PMID 36833261 · Genes (Basel) · 2023
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Dynamics and regulation of mitotic chromatin accessibility bookmarking at single-cell resolution.
PMID 36696508 · Sci Adv · 2023
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In vivo induction of activin A-producing alveolar macrophages supports the progression of lung cell carcinoma.
PMID 36650150 · Nat Commun · 2023
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Critical Role for the Human Cytomegalovirus Major Immediate Early Proteins in Recruitment of RNA Polymerase II and H3K27Ac To an Enhancer-Like Element in Ori
PMID 36645269 · Microbiol Spectr · 2023
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Perturbation of placental protein glycosylation by endoplasmic reticulum stress promotes maladaptation of maternal hepatic glucose metabolism.
PMID 36660474 · iScience · 2022
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Recurrent RNA edits in human preimplantation potentially enhance maternal mRNA clearance.
PMID 36543858 · Commun Biol · 2022
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Global chromatin accessibility profiling analysis reveals a chronic activation state in aged muscle stem cells.
PMID 36093058 · iScience · 2022
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Dioxin-elicited decrease in cobalamin redirects propionyl-CoA metabolism to the β-oxidation-like pathway resulting in acrylyl-CoA conjugate buildup.
PMID 35931118 · J Biol Chem · 2022
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Identification of the stress granule transcriptome via RNA-editing in single cells and in vivo.
PMID 35784648 · Cell Rep Methods · 2022
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Arabidopsis RBV is a conserved WD40 repeat protein that promotes microRNA biogenesis and ARGONAUTE1 loading.
PMID 35260568 · Nat Commun · 2022
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Effect of PAIP1 on the metastatic potential and prognostic significance in oral squamous cell carcinoma.⚑
PMID 35153296 · Int J Oral Sci · 2022
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Transcriptomic-Based Quantification of the Epithelial-Hybrid-Mesenchymal Spectrum across Biological Contexts.
PMID 35053177 · Biomolecules · 2021
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A comprehensive framework for analysis of microRNA sequencing data in metastatic colorectal cancer.
PMID 35047825 · NAR Cancer · 2022
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The butyrophilin 1a1 knockout mouse revisited: Ablation of Btn1a1 leads to concurrent cell death and renewal in the mammary epithelium during lactation.
PMID 34938960 · FASEB Bioadv · 2021
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Reactive astrocytes acquire neuroprotective as well as deleterious signatures in response to Tau and Aß pathology.
PMID 35013236 · Nat Commun · 2022
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Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients.
PMID 35012625 · Genome Biol · 2022
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An archaeal histone-like protein regulates gene expression in response to salt stress.
PMID 34883507 · Nucleic Acids Res · 2021
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