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429 matching publication(s)
Ancient gene duplicates in Gossypium (cotton) exhibit near-complete expression divergence.
PMID 24558256 · Genome Biol Evol · 2014
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A consensus approach to vertebrate de novo transcriptome assembly from RNA-seq data: assembly of the duck (Anas platyrhynchos) transcriptome.
PMID 25009556 · Front Genet · 2014
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Revised annotations, sex-biased expression, and lineage-specific genes in the Drosophila melanogaster group.⚑
PMID 25273863 · G3 (Bethesda) · 2014
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Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing.
PMID 25122667 · G3 (Bethesda) · 2014
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A comparative study of techniques for differential expression analysis on RNA-Seq data.
PMID 25119138 · PLoS One · 2014
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Genome-wide identification of Hfq-regulated small RNAs in the fire blight pathogen Erwinia amylovora discovered small RNAs with virulence regulatory function.
PMID 24885615 · BMC Genomics · 2014
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Comprehensive transcriptome study to develop molecular resources of the copepod Calanus sinicus for their potential ecological applications.⚑
PMID 24982883 · Biomed Res Int · 2014
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Genetic analysis of Leishmania donovani tropism using a naturally attenuated cutaneous strain.
PMID 24992200 · PLoS Pathog · 2014
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TEMP: a computational method for analyzing transposable element polymorphism in populations.
PMID 24753423 · Nucleic Acids Res · 2014
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Nucleosome regulatory dynamics in response to TGFβ.
PMID 24771338 · Nucleic Acids Res · 2014
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Metatranscriptomics of the human oral microbiome during health and disease.
PMID 24692635 · mBio · 2014
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The Li2 mutation results in reduced subgenome expression bias in elongating fibers of allotetraploid cotton (Gossypium hirsutum L.).
PMID 24598808 · PLoS One · 2014
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Polyploidy and the petal transcriptome of Gossypium.
PMID 24393201 · BMC Plant Biol · 2014
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LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq.
PMID 24709818 · Genome Res · 2014
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HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis.
PMID 24475057 · PLoS One · 2014
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Exploring candidate genes for pericarp russet pigmentation of sand pear (Pyrus pyrifolia) via RNA-Seq data in two genotypes contrasting for pericarp color.
PMID 24400075 · PLoS One · 2014
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Does excitatory fronto-extracerebral tDCS lead to improved working memory performance?
PMID 24555105 · F1000Res · 2013
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Vespucci: a system for building annotated databases of nascent transcripts.
PMID 24304890 · Nucleic Acids Res · 2013
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Cyrface: An interface from Cytoscape to R that provides a user interface to R packages.
PMID 24715956 · F1000Res · 2013
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Protein structure quality assessment based on the distance profiles of consecutive backbone Cα atoms.
PMID 24555103 · F1000Res · 2013
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Comparative transcriptome analysis of tomato (Solanum lycopersicum) in response to exogenous abscisic acid.
PMID 24289302 · BMC Genomics · 2013
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Sequencing mRNA from cryo-sliced Drosophila embryos to determine genome-wide spatial patterns of gene expression.
PMID 23951250 · PLoS One · 2013
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A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly.
PMID 23496952 · BMC Genomics · 2013
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Combining evidence of preferential gene-tissue relationships from multiple sources.
PMID 23950964 · PLoS One · 2013
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A global change in RNA polymerase II pausing during the Drosophila midblastula transition.
PMID 23951546 · Elife · 2013
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Hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data.
PMID 24211736 · Methods · 2013
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Transcriptome profiling of Giardia intestinalis using strand-specific RNA-seq.
PMID 23555231 · PLoS Comput Biol · 2013
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FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq.
PMID 23768108 · BMC Bioinformatics · 2013
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RNAseq analysis of the parasitic nematode Strongyloides stercoralis reveals divergent regulation of canonical dauer pathways.
PMID 23145190 · PLoS Negl Trop Dis · 2012
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Contrasting nutrient retention in alpine soils: the role of soil microbiome in phosphorus and nitrogen mobility in scree and meadow environments.
PMID 41632073 · FEMS Microbiol Ecol · 2026
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DNA Methylation Directs Polycomb-Dependent 3D Genome Re-organization in Naive Pluripotency.
PMID 31722211 · Cell Rep · 2019
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Grad-seq identifies KhpB as a global RNA-binding protein in Clostridioides difficile that regulates toxin production.
PMID 37223250 · Microlife · 2021
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High-resolution transcriptome and genome-wide dynamics of RNA polymerase and NusA in Mycobacterium tuberculosis.
PMID 23222129 · Nucleic Acids Res · 2012
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ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.
PMID 22955991 · Genome Res · 2012
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RAGER: A user-friendly computational platform for integrated analysis of RNA-Seq and ATAC-seq data.
PMID 42172220 · PLoS One · 2026
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SpaGene: A Deep Adversarial Framework for Spatial Gene Imputation.
PMID 42146899 · Comput Struct Biotechnol J · 2026
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Therapeutic Stress-Induced Remodeling of Transposable Elements and TE-Gene Chimeras in KYSE150 Esophageal Squamous Cell Carcinoma Cells.
PMID 42074115 · Int J Mol Sci · 2026
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STAT1 and IL-7 as potential diagnostic biomarkers for distinguishing high-grade from low-grade serous ovarian cancer: a mu
PMID 42058211 · Front Immunol · 2026
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Targeting the epigenome and the integrated stress response to normalize colorectal cancer subclonal plasticity and progression.
PMID 41963303 · Cell Death Dis · 2026
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Wireless sensor network design with reliable and long network lifetime.
PMID 41981015 · Sci Rep · 2026
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Identification of key genes in chickpea transcriptomics and the development of ChickpeaOmicsR as a comprehensive resource to advance breeding and genomic studie⚑
PMID 41909810 · Front Bioinform · 2026
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Single-Cell Transcriptomic Landscape of Right-Sided Colon Cancer Reveals Cellular and Molecular Features of Metastatic Potential.
PMID 41898210 · Biomedicines · 2026
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Microbial diversity of plant pathogens and insect endosymbionts in Reptalus artemisiae.
PMID 41826827 · BMC Microbiol · 2026
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Endogenous retroviral elements LTR8B and MER65 rewire PSG9 regulation to control trophoblast syncytialization and pre-eclampsia risk.
PMID 41796334 · Genome Biol · 2026
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Integrated multi-omics analysis combined with clinical validation reveals that HLA-DRB5 and ODAPH are causal risk genes for keratoconus.
PMID 41803193 · Sci Rep · 2026
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ZAP targets aberrant mRNA transcripts encoding proteins with defective signal peptides for degradation.
PMID 41820617 · EMBO J · 2026
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Population structure analysis of Salmonella serovar Muenchen to redefine geno-serotyping using genome indexing approaches.⚑
PMID 41743541 · Front Microbiol · 2026
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Spatial transcriptomics reveals the molecular signatures of prodromal and advanced α-synucleinopathy.
PMID 41736854 · iScience · 2026
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