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193 matching publication(s)
Ancient gene duplicates in Gossypium (cotton) exhibit near-complete expression divergence.
PMID 24558256 · Genome Biol Evol · 2014
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Revised annotations, sex-biased expression, and lineage-specific genes in the Drosophila melanogaster group.⚑
PMID 25273863 · G3 (Bethesda) · 2014
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Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing.
PMID 25122667 · G3 (Bethesda) · 2014
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Genome-wide identification of Hfq-regulated small RNAs in the fire blight pathogen Erwinia amylovora discovered small RNAs with virulence regulatory function.
PMID 24885615 · BMC Genomics · 2014
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Comprehensive transcriptome study to develop molecular resources of the copepod Calanus sinicus for their potential ecological applications.⚑
PMID 24982883 · Biomed Res Int · 2014
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Genetic analysis of Leishmania donovani tropism using a naturally attenuated cutaneous strain.
PMID 24992200 · PLoS Pathog · 2014
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TEMP: a computational method for analyzing transposable element polymorphism in populations.
PMID 24753423 · Nucleic Acids Res · 2014
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Nucleosome regulatory dynamics in response to TGFβ.
PMID 24771338 · Nucleic Acids Res · 2014
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Metatranscriptomics of the human oral microbiome during health and disease.
PMID 24692635 · mBio · 2014
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The Li2 mutation results in reduced subgenome expression bias in elongating fibers of allotetraploid cotton (Gossypium hirsutum L.).
PMID 24598808 · PLoS One · 2014
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Polyploidy and the petal transcriptome of Gossypium.
PMID 24393201 · BMC Plant Biol · 2014
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Vespucci: a system for building annotated databases of nascent transcripts.
PMID 24304890 · Nucleic Acids Res · 2013
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Protein structure quality assessment based on the distance profiles of consecutive backbone Cα atoms.
PMID 24555103 · F1000Res · 2013
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Sequencing mRNA from cryo-sliced Drosophila embryos to determine genome-wide spatial patterns of gene expression.
PMID 23951250 · PLoS One · 2013
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A comparison across non-model animals suggests an optimal sequencing depth for de novo transcriptome assembly.
PMID 23496952 · BMC Genomics · 2013
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A global change in RNA polymerase II pausing during the Drosophila midblastula transition.
PMID 23951546 · Elife · 2013
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71/100
FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq.
PMID 23768108 · BMC Bioinformatics · 2013
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RNAseq analysis of the parasitic nematode Strongyloides stercoralis reveals divergent regulation of canonical dauer pathways.
PMID 23145190 · PLoS Negl Trop Dis · 2012
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Contrasting nutrient retention in alpine soils: the role of soil microbiome in phosphorus and nitrogen mobility in scree and meadow environments.
PMID 41632073 · FEMS Microbiol Ecol · 2026
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ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia.
PMID 22955991 · Genome Res · 2012
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Targeting the epigenome and the integrated stress response to normalize colorectal cancer subclonal plasticity and progression.
PMID 41963303 · Cell Death Dis · 2026
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Endogenous retroviral elements LTR8B and MER65 rewire PSG9 regulation to control trophoblast syncytialization and pre-eclampsia risk.
PMID 41796334 · Genome Biol · 2026
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ZAP targets aberrant mRNA transcripts encoding proteins with defective signal peptides for degradation.
PMID 41820617 · EMBO J · 2026
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Population structure analysis of Salmonella serovar Muenchen to redefine geno-serotyping using genome indexing approaches.⚑
PMID 41743541 · Front Microbiol · 2026
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Spatial transcriptomics reveals the molecular signatures of prodromal and advanced α-synucleinopathy.
PMID 41736854 · iScience · 2026
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A Meta-Analysis of the Effects of Chronic Stress on the Prefrontal Transcriptome in Animal Models and Convergence With Existing Human Data.
PMID 41566898 · Brain Behav · 2026
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Investigating epigenetic biomarkers of age, sex, and disease in captive South African cheetahs (Acinonyx jubatus jubatus).
PMID 41528985 · PLoS One · 2026
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Early life-stage thermal resilience is determined by climate-linked regulatory variation.
PMID 41505517 · Proc Natl Acad Sci U S A · 2026
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Manual curation for improved genome annotation of the functionally extinct northern white rhinoceros (Ceratotherium simum cottoni).
PMID 41490125 · PLoS One · 2026
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Assembly of Macromolecular Complexes in the Whole-Cell Model of a Minimal Cell.
PMID 41427637 · J Phys Chem B · 2025
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Advances in genomic and pharmacokinetic profiling for clinical stratification of metastatic breast cancer.
PMID 41369820 · Discov Oncol · 2025
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Microglial Fkbp5 Impairs Post-Stroke Vascular Integrity and Regeneration by Promoting Yap1-Mediated Glycolysis and Oxidative Phosphorylation.
PMID 41355597 · Adv Sci (Weinh) · 2025
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Directly observing the magnetic rope contraction and expansion in space.⚑
PMID 41298493 · Nat Commun · 2025
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BiRNA-BERT allows efficient RNA language modeling with adaptive tokenization.
PMID 41266599 · Commun Biol · 2025
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Cell type- and species-specific regulation of hepatic lncRNAs by TCDD-activated aryl hydrocarbon receptor.
PMID 41136526 · Sci Rep · 2025
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Distinct senotypes in p16- and p21-positive cells across human and mouse aging tissues.
PMID 41162753 · EMBO J · 2025
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Caloric Restriction Reprograms Adipose Tissues in Rhesus Monkeys.
PMID 41042069 · Aging Cell · 2025
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Generative and integrative modeling for transcriptomics with formalin fixed paraffin embedded material.
PMID 41029822 · J Transl Med · 2025
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Caecilians maintain a functional long-wavelength-sensitive cone opsin gene despite signatures of relaxed selection and more than 200 million years of fossoriali⚑
PMID 40990923 · Evolution · 2025
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A blood-based DNA damage signature in patients with Parkinson's disease is associated with disease progression.
PMID 40913219 · Nat Aging · 2025
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Interpretable and integrative analysis of single-cell multiomics with scMKL.
PMID 40770488 · Commun Biol · 2025
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H3K27 and H3K9 methylation mask potential CTCF binding sites to maintain 3D genome integrity.⚑
PMID 40764058 · Genome Res · 2025
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L-Arabinose Alters the E. coli Transcriptome to Favor Biofilm Growth and Enhances Survival During Fluoroquinolone Stress.
PMID 40732174 · Microorganisms · 2025
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Leveraging RNA-seq deconvolution to improve complex in vitro model characterization.
PMID 40701251 · J Biol Chem · 2025
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Environmental Drivers of Genetic Divergence in Two Corals From the Florida Keys.
PMID 40589611 · Evol Appl · 2025
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IL-6 trans-Signaling Regulates Neutrophilic Inflammation in Alcohol-Associated Hepatitis.
PMID 40562277 · Am J Pathol · 2025
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COVID-19 vaccination atlas using an integrative systems vaccinology approach.
PMID 40456760 · NPJ Vaccines · 2025
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MACanalyzeR scRNAseq analysis tool reveals PPARγHIGH/GDF15HIGH lipid-associated macrophages facilitate thermogenic⚑
PMID 40450001 · Nat Commun · 2025
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The motor neuron m6A repertoire governs neuronal homeostasis and FTO inhibition mitigates ALS symptom manifestation.⚑
PMID 40307231 · Nat Commun · 2025
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