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86 matching publication(s)
Workflow sharing with automated metadata validation and test execution to improve the reusability of published workflows.
PMID 36810800 · Gigascience · 2022
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TOSCA: an automated Tumor Only Somatic CAlling workflow for somatic mutation detection without matched normal samples.
PMID 36699358 · Bioinform Adv · 2022
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Perturbation of placental protein glycosylation by endoplasmic reticulum stress promotes maladaptation of maternal hepatic glucose metabolism.
PMID 36660474 · iScience · 2022
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Transcriptome profiling of osteoclast subsets associated with arthritis: A pathogenic role of CCR2hi osteoclast progenitors.
PMID 36591261 · Front Immunol · 2022
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Comparison of Metagenomics and Metatranscriptomics Tools: A Guide to Making the Right Choice.
PMID 36553546 · Genes (Basel) · 2022
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Oxidative stress protection and growth promotion activity of Pseudomonas mercuritolerans sp. nov., in forage plants under mercury abiotic stress conditio⚑
PMID 36560952 · Front Microbiol · 2022
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An individualized causal framework for learning intercellular communication networks that define microenvironments of individual tumors.
PMID 36548438 · PLoS Comput Biol · 2022
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Autoencoder Networks Decipher the Association between Lung Cancer and Alzheimer's Disease.
PMID 36518809 · Comput Intell Neurosci · 2022
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hgtseq: A Standard Pipeline to Study Horizontal Gene Transfer.
PMID 36498841 · Int J Mol Sci · 2022
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Comprehensive comparison of gene expression diversity among a variety of human stem cells.
PMID 36458020 · NAR Genom Bioinform · 2022
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Extensive androgen receptor enhancer heterogeneity in primary prostate cancers underlies transcriptional diversity and metastatic potential.
PMID 36450752 · Nat Commun · 2022
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Spatial transcriptomics demonstrates the role of CD4 T cells in effector CD8 T cell differentiation during chronic viral infection.
PMID 36450262 · Cell Rep · 2022
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MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions.
PMID 36451166 · Genome Biol · 2022
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Comprehensive Transcriptome Analysis Reveals Genome-Wide Changes Associated with Endoplasmic Reticulum (ER) Stress in Potato (Solanum tuberosum L.).
PMID 36430273 · Int J Mol Sci · 2022
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KARAJ: An Efficient Adaptive Multi-Processor Tool to Streamline Genomic and Transcriptomic Sequence Data Acquisition.
PMID 36430895 · Int J Mol Sci · 2022
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Dissecting lncRNA-mRNA competitive regulatory network in human islet tissue exosomes of a type 1 diabetes model reveals exosome miRNA markers.
PMID 36440209 · Front Endocrinol (Lausanne) · 2022
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Modulation of HERV Expression by Four Different Encephalitic Arboviruses during Infection of Human Primary Astrocytes.⚑
PMID 36423114 · Viruses · 2022
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N6-methyladenosine (m6A) reader Pho92 is recruited co-transcriptionally and couples translation to mRNA decay to promote meiotic fitness in y⚑
PMID 36422864 · Elife · 2022
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Cost-effectively dissecting the genetic architecture of complex wool traits in rabbits by low-coverage sequencing.
PMID 36401180 · Genet Sel Evol · 2022
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CHD7 regulates otic lineage specification and hair cell differentiation in human inner ear organoids.
PMID 36396635 · Nat Commun · 2022
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Genetic architecture of natural variation of cardiac performance from flies to humans.
PMID 36383075 · Elife · 2022
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Mod(mdg4) variants repress telomeric retrotransposon HeT-A by blocking subtelomeric enhancers.
PMID 36373634 · Nucleic Acids Res · 2022
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Heterogeneity and Differentiation Trajectories of Infiltrating CD8+ T Cells in Lung Adenocarcinoma.⚑
PMID 36358600 · Cancers (Basel) · 2022
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A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata.
PMID 36333777 · Microbiome · 2022
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Single-cell transcriptomics identifies Keap1-Nrf2 regulated collective invasion in a Drosophila tumor model.
PMID 36321803 · Elife · 2022
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Stromal androgen signaling acts as tumor niches to drive prostatic basal epithelial progenitor-initiated oncogenesis.⚑
PMID 36323713 · Nat Commun · 2022
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spliceJAC: transition genes and state-specific gene regulation from single-cell transcriptome data.⚑
PMID 36321549 · Mol Syst Biol · 2022
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Identification of intrinsic genes across general hypertension, hypertension with left ventricular remodeling, and uncontrolled hypertension.
PMID 36277786 · Front Cardiovasc Med · 2022
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CASK loss of function differentially regulates neuronal maturation and synaptic function in human induced cortical excitatory neurons.
PMID 36262316 · iScience · 2022
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The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.
PMID 36262335 · F1000Res · 2022
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binny: an automated binning algorithm to recover high-quality genomes from complex metagenomic datasets.
PMID 36239393 · Brief Bioinform · 2022
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Mining the equine gut metagenome: poorly-characterized taxa associated with cardiovascular fitness in endurance athletes.⚑
PMID 36192523 · Commun Biol · 2022
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Lineage-specific, fast-evolving GATA-like gene regulates zygotic gene activation to promote endoderm specification and pattern formation in the Theridiidae spid
PMID 36203191 · BMC Biol · 2022
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Effects of replication domains on genome-wide UV-induced DNA damage and repair.
PMID 36155646 · PLoS Genet · 2022
74/100
RiboTaxa: combined approaches for rRNA genes taxonomic resolution down to the species level from metagenomics data revealing novelties.
PMID 36159175 · NAR Genom Bioinform · 2022
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Estimating biodiversity across the tree of life on Mount Everest's southern flank with environmental DNA.
PMID 36148432 · iScience · 2022
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A feed-forward pathway drives LRRK2 kinase membrane recruitment and activation.
PMID 36149401 · Elife · 2022
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Evaluation of the Available Variant Calling Tools for Oxford Nanopore Sequencing in Breast Cancer.⚑
PMID 36140751 · Genes (Basel) · 2022
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Global chromatin accessibility profiling analysis reveals a chronic activation state in aged muscle stem cells.
PMID 36093058 · iScience · 2022
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auts2 Features and Expression Are Highly Conserved during Evolution Despite Different Evolutionary Fates Following Whole Genome Duplication.
PMID 36078102 · Cells · 2022
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Transcriptomics, regulatory syntax, and enhancer identification in mesoderm-induced ESCs at single-cell resolution.⚑
PMID 35977485 · Cell Rep · 2022
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Dioxin-elicited decrease in cobalamin redirects propionyl-CoA metabolism to the β-oxidation-like pathway resulting in acrylyl-CoA conjugate buildup.
PMID 35931118 · J Biol Chem · 2022
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Tourmaline: A containerized workflow for rapid and iterable amplicon sequence analysis using QIIME 2 and Snakemake.⚑
PMID 35902092 · Gigascience · 2022
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Gene module regulation in dilated cardiomyopathy and the role of Na/K-ATPase.⚑
PMID 35901050 · PLoS One · 2022
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iCOMIC: a graphical interface-driven bioinformatics pipeline for analyzing cancer omics data.
PMID 35899080 · NAR Genom Bioinform · 2022
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Comparative Metagenomic Analysis of Biosynthetic Diversity across Sponge Microbiomes Highlights Metabolic Novelty, Conservation, and Diversification.
PMID 35862823 · mSystems · 2022
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Genome-wide DNA hypermethylation opposes healing in patients with chronic wounds by impairing epithelial-mesenchymal transition.⚑
PMID 35819852 · J Clin Invest · 2022
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Identification of the stress granule transcriptome via RNA-editing in single cells and in vivo.
PMID 35784648 · Cell Rep Methods · 2022
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High-throughput sequencing SELEX for the determination of DNA-binding protein specificities in vitro.
PMID 35776646 · STAR Protoc · 2022
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