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29 matching publication(s)
RAGER: A user-friendly computational platform for integrated analysis of RNA-Seq and ATAC-seq data.
PMID 42172220 · PLoS One · 2026
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Integrated multi-omics analysis combined with clinical validation reveals that HLA-DRB5 and ODAPH are causal risk genes for keratoconus.
PMID 41803193 · Sci Rep · 2026
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64/100
huSA: a comprehensive database for multi-dimensional resolution of bulk, single cell and spatial transcription profiles in skin diseases.
PMID 41719583 · Database (Oxford) · 2026
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50/100
Enhancing cell subpopulation discovery in cancer by integrating single-cell transcriptome and expressed variants.
PMID 41647537 · Fundam Res · 2025
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68/100
iceDP: identifying inter-chromatin engagement via density peaks clustering algorithm.⚑
PMID 41499218 · Brief Bioinform · 2026
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53/100
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Comprehensive bioinformatics analysis and experimental verification identify mitochondrial gene Dgat2 as a novel therapeutic biomarker for myocardial ischemia-r
PMID 40510478 · Front Endocrinol (Lausanne) · 2025
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scATD: a high-throughput and interpretable framework for single-cell cancer drug resistance prediction and biomarker identification.
PMID 40501071 · Brief Bioinform · 2025
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62/100
Identification and validation of a metabolic-related gene risk model predicting the prognosis of lung, colon, and breast cancers.
PMID 39779736 · Sci Rep · 2025
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74/100
CD14loCD301b+ macrophages gathering as a proangiogenic marker in adipose tissues.
PMID 39645040 · J Lipid Res · 2024
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59/100
The Multi-State Epigenetic Pacemaker enables the identification of combinations of factors that influence DNA methylation.
PMID 39549198 · Geroscience · 2024
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54/100
A comparative analysis of blastoid models through single-cell transcriptomics.
PMID 39524369 · iScience · 2024
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60/100
Exploring the prognostic and diagnostic value of lactylation-related genes in sepsis.
PMID 39367086 · Sci Rep · 2024
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73/100
Community assessment of methods to deconvolve cellular composition from bulk gene expression.
PMID 39191725 · Nat Commun · 2024
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63/100
Identification of the shared hub gene signatures and molecular mechanisms between HIV-1 and pulmonary arterial hypertension.
PMID 38528047 · Sci Rep · 2024
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71/100
Design of a targeted blood transcriptional panel for monitoring immunological changes accompanying pregnancy.
PMID 38352867 · Front Immunol · 2024
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73/100
Transcriptome and machine learning analysis of the impact of COVID-19 on mitochondria and multiorgan damage.
PMID 38295140 · PLoS One · 2024
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71/100
Refining breast cancer biomarker discovery and drug targeting through an advanced data-driven approach.
PMID 38253993 · BMC Bioinformatics · 2024
59/100
HArmonized single-cell RNA-seq Cell type Assisted Deconvolution (HASCAD).
PMID 37907883 · BMC Med Genomics · 2023
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67/100
Identification and verification of diagnostic biomarkers in recurrent pregnancy loss via machine learning algorithm and WGCNA.⚑
PMID 37691920 · Front Immunol · 2023
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55/100
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UNMF: a unified nonnegative matrix factorization for multi-dimensional omics data.
PMID 37478378 · Brief Bioinform · 2023
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60/100
Cell-type annotation with accurate unseen cell-type identification using multiple references.
PMID 37379341 · PLoS Comput Biol · 2023
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68/100
A global database for modeling tumor-immune cell communication.
PMID 37438390 · Sci Data · 2023
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66/100
Dissecting lncRNA-mRNA competitive regulatory network in human islet tissue exosomes of a type 1 diabetes model reveals exosome miRNA markers.
PMID 36440209 · Front Endocrinol (Lausanne) · 2022
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50/100
Deconvolution of the hematopoietic stem cell microenvironment reveals a high degree of specialization and conservation.
PMID 35494238 · iScience · 2022
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60/100
Bioinformatics and system biology approaches to identify pathophysiological impact of COVID-19 to the progression and severity of neurological diseases.⚑
PMID 34601390 · Comput Biol Med · 2021
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69/100
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Identification of TYR, TYRP1, DCT and LARP7 as related biomarkers and immune infiltration characteristics of vitiligo via comprehensive strategies.
PMID 34107850 · Bioengineered · 2021
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55/100
Qualitative Transcriptional Signature for the Pathological Diagnosis of Pancreatic Cancer.
PMID 33173782 · Front Mol Biosci · 2020
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71/100
Wx: a neural network-based feature selection algorithm for transcriptomic data.
PMID 31324856 · Sci Rep · 2019
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50/100
Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data.
PMID 29420797 · Nucleic Acids Res · 2018
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68/100