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202 matching publication(s)
Profiling chromatin accessibility responses in human neutrophils with sensitive pathogen detection.⚑
PMID 34145026 · Life Sci Alliance · 2021
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Genomics of Environmental Salmonella: Engaging Students in the Microbiology and Bioinformatics of Foodborne Pathogens.
PMID 33967968 · Front Microbiol · 2021
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From tides to nucleotides: Genomic signatures of adaptation to environmental heterogeneity in barnacles.
PMID 33960035 · Mol Ecol · 2021
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59/100
SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses.
PMID 33932985 · BMC Bioinformatics · 2021
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Coding and non-coding roles of MOCCI (C15ORF48) coordinate to regulate host inflammation and immunity.
PMID 33837217 · Nat Commun · 2021
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Diapause vs. reproductive programs: transcriptional phenotypes in a keystone copepod.⚑
PMID 33782539 · Commun Biol · 2021
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57/100
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GAUGE-Annotated Microbial Transcriptomic Data Facilitate Parallel Mining and High-Throughput Reanalysis To Form Data-Driven Hypotheses.
PMID 33758032 · mSystems · 2021
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Circulating mucosal-associated invariant T cells identify patients responding to anti-PD-1 therapy.
PMID 33723257 · Nat Commun · 2021
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Prime editing in mice reveals the essentiality of a single base in driving tissue-specific gene expression.
PMID 33722289 · Genome Biol · 2021
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Extensive tissue-specific expression variation and novel regulators underlying circadian behavior.
PMID 33514540 · Sci Adv · 2021
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Interaction between SNAI2 and MYOD enhances oncogenesis and suppresses differentiation in Fusion Negative Rhabdomyosarcoma.
PMID 33420019 · Nat Commun · 2021
50/100
Regulatory and evolutionary adaptation of yeast to acute lethal ethanol stress.
PMID 33170850 · PLoS One · 2020
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Enhancer Reprogramming Confers Dependence on Glycolysis and IGF Signaling in KMT2D Mutant Melanoma.
PMID 33086062 · Cell Rep · 2020
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Metabolic profiling during malaria reveals the role of the aryl hydrocarbon receptor in regulating kidney injury.
PMID 33021470 · Elife · 2020
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62/100
Expression Patterns of Immune Genes Reveal Heterogeneous Subtypes of High-Risk Neuroblastoma.
PMID 32629858 · Cancers (Basel) · 2020
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73/100
A crowdsourced set of curated structural variants for the human genome.
PMID 32559231 · PLoS Comput Biol · 2020
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Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells.⚑
PMID 32596448 · Sci Adv · 2020
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57/100
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In vivo microscopy reveals macrophage polarization locally promotes coherent microtubule dynamics in migrating cancer cells.
PMID 32665556 · Nat Commun · 2020
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miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems.
PMID 32374865 · Nucleic Acids Res · 2020
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61/100
Equivalent change enrichment analysis: assessing equivalent and inverse change in biological pathways between diverse experiments.⚑
PMID 32093613 · BMC Genomics · 2020
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62/100
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Integrative network modeling reveals mechanisms underlying T cell exhaustion.
PMID 32024856 · Sci Rep · 2020
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59/100
Regulatory Noncoding Small RNAs Are Diverse and Abundant in an Extremophilic Microbial Community.⚑
PMID 32019831 · mSystems · 2020
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57/100
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RNAmountAlign: Efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment.
PMID 31978147 · PLoS One · 2020
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PulmonDB: a curated lung disease gene expression database.⚑
PMID 31949184 · Sci Rep · 2020
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53/100
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Histone hyperacetylation disrupts core gene regulatory architecture in rhabdomyosarcoma.⚑
PMID 31784732 · Nat Genet · 2019
58/100
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Wx: a neural network-based feature selection algorithm for transcriptomic data.
PMID 31324856 · Sci Rep · 2019
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Comparing time series transcriptome data between plants using a network module finding algorithm.
PMID 31164912 · Plant Methods · 2019
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GREIN: An Interactive Web Platform for Re-analyzing GEO RNA-seq Data.
PMID 31110304 · Sci Rep · 2019
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Integrating herbarium specimen observations into global phenology data systems.
PMID 30937223 · Appl Plant Sci · 2019
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Yap1 safeguards mouse embryonic stem cells from excessive apoptosis during differentiation.
PMID 30561326 · Elife · 2018
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A methyl-sensitive element induces bidirectional transcription in TATA-less CpG island-associated promoters.
PMID 30332484 · PLoS One · 2018
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Comparative analysis of circular RNAs between soybean cytoplasmic male-sterile line NJCMS1A and its maintainer NJCMS1B by high-throughput sequencing.
PMID 30208848 · BMC Genomics · 2018
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Cancer-predicting transcriptomic and epigenetic signatures revealed for ulcerative colitis in patient-derived epithelial organoids.
PMID 29983891 · Oncotarget · 2018
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Genome-wide screening of potential RNase Y-processed mRNAs in the M49 serotype Streptococcus pyogenes NZ131.⚑
PMID 29900693 · Microbiologyopen · 2018
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57/100
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Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data.
PMID 29420797 · Nucleic Acids Res · 2018
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Wide-Open: Accelerating public data release by automating detection of overdue datasets.
PMID 28594819 · PLoS Biol · 2017
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An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study.
PMID 27583132 · F1000Res · 2016
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Spatial organization shapes the turnover of a bacterial transcriptome.
PMID 27198188 · Elife · 2016
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71/100
Integrative analyses reveal signaling pathways underlying familial breast cancer susceptibility.
PMID 26969729 · Mol Syst Biol · 2016
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HGA: de novo genome assembly method for bacterial genomes using high coverage short sequencing reads.⚑
PMID 26945881 · BMC Genomics · 2016
58/100
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Phylogenetic analysis of higher-level relationships within Hydroidolina (Cnidaria: Hydrozoa) using mitochondrial genome data and insight into their mitochondria⚑
PMID 26618080 · PeerJ · 2015
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68/100
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Discovery and characterization of Alu repeat sequences via precise local read assembly.
PMID 26503250 · Nucleic Acids Res · 2015
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Genomic Correlates of Virulence Attenuation in the Deadly Amphibian Chytrid Fungus, Batrachochytrium dendrobatidis.⚑
PMID 26333840 · G3 (Bethesda) · 2015
58/100
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Transcriptome assembly, profiling and differential gene expression analysis of the halophyte Suaeda fruticosa provides insights into salt tolerance.
PMID 25943316 · BMC Genomics · 2015
73/100
A method for selectively enriching microbial DNA from contaminating vertebrate host DNA.
PMID 24204593 · PLoS One · 2013
71/100
Mutations in CHD7, encoding a chromatin-remodeling protein, cause idiopathic hypogonadotropic hypogonadism and Kallmann syndrome.
PMID 18834967 · · 2008
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A transcriptomic atlas of Aedes aegypti reveals detailed functional organization of major body parts and gut regional specializations in sugar-fed and bl
PMID 35471187 · Elife · 2022
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