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30 matching publication(s)
RummaGEO: Automatic mining of human and mouse gene sets from GEO.
PMID 39569206 · Patterns (N Y) · 2024
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A comparative analysis of blastoid models through single-cell transcriptomics.
PMID 39524369 · iScience · 2024
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60/100
Exploring the prognostic and diagnostic value of lactylation-related genes in sepsis.
PMID 39367086 · Sci Rep · 2024
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73/100
Community assessment of methods to deconvolve cellular composition from bulk gene expression.
PMID 39191725 · Nat Commun · 2024
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63/100
Identifying human pre-mRNA cleavage and polyadenylation factors by genome-wide CRISPR screens using a dual fluorescence readthrough reporter.
PMID 38587191 · Nucleic Acids Res · 2024
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68/100
Transcriptome and machine learning analysis of the impact of COVID-19 on mitochondria and multiorgan damage.
PMID 38295140 · PLoS One · 2024
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71/100
Refining breast cancer biomarker discovery and drug targeting through an advanced data-driven approach.
PMID 38253993 · BMC Bioinformatics · 2024
59/100
Unraveling the timeline of gene expression: A pseudotemporal trajectory analysis of single-cell RNA sequencing data.
PMID 37994351 · F1000Res · 2023
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67/100
Identification and verification of diagnostic biomarkers in recurrent pregnancy loss via machine learning algorithm and WGCNA.⚑
PMID 37691920 · Front Immunol · 2023
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55/100
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UNMF: a unified nonnegative matrix factorization for multi-dimensional omics data.
PMID 37478378 · Brief Bioinform · 2023
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60/100
Cell-type annotation with accurate unseen cell-type identification using multiple references.
PMID 37379341 · PLoS Comput Biol · 2023
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68/100
Exploiting convergent phenotypes to derive a pan-cancer cisplatin response gene expression signature.
PMID 37076665 · NPJ Precis Oncol · 2023
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50/100
Dissecting lncRNA-mRNA competitive regulatory network in human islet tissue exosomes of a type 1 diabetes model reveals exosome miRNA markers.
PMID 36440209 · Front Endocrinol (Lausanne) · 2022
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50/100
Identification of the stress granule transcriptome via RNA-editing in single cells and in vivo.
PMID 35784648 · Cell Rep Methods · 2022
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66/100
Deconvolution of the hematopoietic stem cell microenvironment reveals a high degree of specialization and conservation.
PMID 35494238 · iScience · 2022
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60/100
Bioinformatics and system biology approaches to identify pathophysiological impact of COVID-19 to the progression and severity of neurological diseases.⚑
PMID 34601390 · Comput Biol Med · 2021
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69/100
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A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells.
PMID 34426512 · Genome Res · 2021
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57/100
Creation of a Single Cell RNASeq Meta-Atlas to Define Human Liver Immune Homeostasis.⚑
PMID 34335581 · Front Immunol · 2021
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63/100
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Identification of TYR, TYRP1, DCT and LARP7 as related biomarkers and immune infiltration characteristics of vitiligo via comprehensive strategies.
PMID 34107850 · Bioengineered · 2021
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55/100
treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses.
PMID 34001188 · Genome Biol · 2021
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73/100
A crowdsourced set of curated structural variants for the human genome.
PMID 32559231 · PLoS Comput Biol · 2020
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71/100
Equivalent change enrichment analysis: assessing equivalent and inverse change in biological pathways between diverse experiments.⚑
PMID 32093613 · BMC Genomics · 2020
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62/100
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Regulatory Noncoding Small RNAs Are Diverse and Abundant in an Extremophilic Microbial Community.⚑
PMID 32019831 · mSystems · 2020
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57/100
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PulmonDB: a curated lung disease gene expression database.⚑
PMID 31949184 · Sci Rep · 2020
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53/100
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Wx: a neural network-based feature selection algorithm for transcriptomic data.
PMID 31324856 · Sci Rep · 2019
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50/100
Comparing time series transcriptome data between plants using a network module finding algorithm.
PMID 31164912 · Plant Methods · 2019
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59/100
Predicting enhancers in mammalian genomes using supervised hidden Markov models.
PMID 30917778 · BMC Bioinformatics · 2019
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70/100
Proteogenomic analysis prioritises functional single nucleotide variants in cancer samples.⚑
PMID 29221171 · Oncotarget · 2017
73/100
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An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study.
PMID 27583132 · F1000Res · 2016
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74/100
Integrative analyses reveal signaling pathways underlying familial breast cancer susceptibility.
PMID 26969729 · Mol Syst Biol · 2016
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67/100