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Evaluation of core genome and whole genome multilocus sequence typing schemes for Campylobacter jejuni and Campylobacter coli outbreak detection i
PMID 37133905 · Microb Genom · 2023
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Chromosome-level genome assembly of Lilford's wall lizard, Podarcis lilfordi (Günther, 1874) from the Balearic Islands (Spain).
PMID 37137526 · DNA Res · 2023
85/100
VirPipe: an easy-to-use and customizable pipeline for detecting viral genomes from Nanopore sequencing.
PMID 37129547 · Bioinformatics · 2023
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83/100
Single duplex DNA sequencing with CODEC detects mutations with high sensitivity.
PMID 37106072 · Nat Genet · 2023
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78/100
Predicting the pathogenicity of missense variants using features derived from AlphaFold2.
PMID 37084271 · Bioinformatics · 2023
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85/100
Improved eukaryotic detection compatible with large-scale automated analysis of metagenomes.
PMID 37032329 · Microbiome · 2023
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89/100
The selection of software and database for metagenomics sequence analysis impacts the outcome of microbial profiling and pathogen detection.
PMID 37027361 · PLoS One · 2023
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86/100
transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation.
PMID 37016291 · BMC Bioinformatics · 2023
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95/100
iBRIDGE: A Data Integration Method to Identify Inflamed Tumors from Single-cell RNA-Seq Data and Differentiate Cell Type-Specific Markers of Immune-Cell Infiltr
PMID 37023414 · Cancer Immunol Res · 2023
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Chemical and genomic characterization of a potential probiotic treatment for stony coral tissue loss disease.
PMID 37024599 · Commun Biol · 2023
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85/100
TrEMOLO: accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches.
PMID 37013657 · Genome Biol · 2023
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89/100
Niche Modification by Sulfate-Reducing Bacteria Drives Microbial Community Assembly in Anoxic Marine Sediments.
PMID 36988509 · mBio · 2023
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100/100
Transcriptomic data meta-analysis reveals common and injury model specific gene expression changes in the regenerating zebrafish heart.
PMID 37012284 · Sci Rep · 2023
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90/100
Prioritized mass spectrometry increases the depth, sensitivity and data completeness of single-cell proteomics.
PMID 37012480 · Nat Methods · 2023
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90/100
nf-core/isoseq: simple gene and isoform annotation with PacBio Iso-Seq long-read sequencing.
PMID 36961337 · Bioinformatics · 2023
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88/100
Multiomic analysis of malignant pleural mesothelioma identifies molecular axes and specialized tumor profiles driving intertumor heterogeneity.
PMID 36928603 · Nat Genet · 2023
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80/100
An improved assembly of the pearl millet reference genome using Oxford Nanopore long reads and optical mapping.
PMID 36891809 · G3 (Bethesda) · 2023
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90/100
Assessing the impacts of COVID-19 vaccination programme's timing and speed on health benefits, cost-effectiveness, and relative affordability in 27 African coun
PMID 36882868 · BMC Med · 2023
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89/100
Whole-genome sequencing of cryopreserved resources from French Large White pigs at two distinct sampling times reveals strong signatures of convergent and diver
PMID 36864379 · Genet Sel Evol · 2023
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100/100
Screening of core genes prognostic for sepsis and construction of a ceRNA regulatory network.
PMID 36855106 · BMC Med Genomics · 2023
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86/100
Shifts from cooperative to individual-based predation defense determine microbial predator-prey dynamics.
PMID 36854789 · ISME J · 2023
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84/100
Emergent dynamics of underlying regulatory network links EMT and androgen receptor-dependent resistance in prostate cancer.
PMID 36851919 · Comput Struct Biotechnol J · 2023
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78/100
Enteroendocrine cell lineages that differentially control feeding and gut motility.
PMID 36810133 · Elife · 2023
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88/100
GSDME-mediated pyroptosis promotes the progression and associated inflammation of atherosclerosis.
PMID 36807553 · Nat Commun · 2023
85/100
Enabling Single-Cell Drug Response Annotations from Bulk RNA-Seq Using SCAD.
PMID 36762572 · Adv Sci (Weinh) · 2023
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81/100
Identification of genes influencing the evolution of Escherichia coli ST372 in dogs and humans.
PMID 36752777 · Microb Genom · 2023
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89/100
Transcriptome-wide analyses of piRNA binding sites suggest distinct mechanisms regulate piRNA binding and silencing in C. elegans.
PMID 36737102 · RNA · 2023
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88/100
A step forward for Shiga toxin-producing Escherichia coli identification and characterization in raw milk using long-read metagenomics.
PMID 36748417 · Microb Genom · 2022
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75/100
maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks.
PMID 36719906 · PLoS Comput Biol · 2023
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QuasiFlow: a Nextflow pipeline for analysis of NGS-based HIV-1 drug resistance data.
PMID 36699347 · Bioinform Adv · 2022
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78/100
nf-core/circrna: a portable workflow for the quantification, miRNA target prediction and differential expression analysis of circular RNAs.
PMID 36694127 · BMC Bioinformatics · 2023
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76/100
Hierarchical cell-type identifier accurately distinguishes immune-cell subtypes enabling precise profiling of tissue microenvironment with single-cell RNA-seque
PMID 36681937 · Brief Bioinform · 2023
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94/100
A temporal classifier predicts histopathology state and parses acute-chronic phasing in inflammatory bowel disease patients.
PMID 36694043 · Commun Biol · 2023
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83/100
Genomic insight into the influence of selection, crossbreeding, and geography on population structure in poultry.
PMID 36670351 · Genet Sel Evol · 2023
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100/100
In vivo induction of activin A-producing alveolar macrophages supports the progression of lung cell carcinoma.
PMID 36650150 · Nat Commun · 2023
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96/100
Critical Role for the Human Cytomegalovirus Major Immediate Early Proteins in Recruitment of RNA Polymerase II and H3K27Ac To an Enhancer-Like Element in Ori
PMID 36645269 · Microbiol Spectr · 2023
93/100
A network-guided protocol to discover susceptibility genes in genome-wide association studies using stability selection.
PMID 36609152 · STAR Protoc · 2023
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92/100
Transcriptomic analysis unravels the molecular response of Lonicera japonica leaves to chilling stress.
PMID 36618608 · Front Plant Sci · 2022
75/100
Progressive transformation of the HIV-1 reservoir cell profile over two decades of antiviral therapy.
PMID 36596305 · Cell Host Microbe · 2023
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80/100
Depletion of HIV reservoir by activation of ISR signaling in resting CD4+T cells.
PMID 36590168 · iScience · 2022
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89/100
LMAS: evaluating metagenomic short de novo assembly methods through defined communities.
PMID 36576131 · Gigascience · 2022
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86/100
Recurrent RNA edits in human preimplantation potentially enhance maternal mRNA clearance.
PMID 36543858 · Commun Biol · 2022
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100/100
Deep learning based protocol to construct an immune-related gene network of host-pathogen interactions in plants.
PMID 36525344 · STAR Protoc · 2022
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96/100
Disentangling the causal relationship between rabbit growth and cecal microbiota through structural equation models.
PMID 36536288 · Genet Sel Evol · 2022
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93/100
Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
PMID 36513983 · BMC Bioinformatics · 2022
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99/100
Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics.
PMID 36457147 · RNA Biol · 2022
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93/100
annotate_my_genomes: an easy-to-use pipeline to improve genome annotation and uncover neglected genes by hybrid RNA sequencing.
PMID 36472574 · Gigascience · 2022
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78/100
MirDIP 5.2: tissue context annotation and novel microRNA curation.
PMID 36453996 · Nucleic Acids Res · 2023
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89/100