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299 matching publication(s)
spotter: a single-nucleotide resolution stochastic simulation model of supercoiling-mediated transcription and translation in prokaryotes.
PMID 37602419 · Nucleic Acids Res · 2023
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Genetics of circulating inflammatory proteins identifies drivers of immune-mediated disease risk and therapeutic targets.
PMID 37563310 · Nat Immunol · 2023
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Gene signature discovery and systematic validation across diverse clinical cohorts for TB prognosis and response to treatment.
PMID 37471455 · PLoS Comput Biol · 2023
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100/100
Systematic Assessment of Small RNA Profiling in Human Extracellular Vesicles.
PMID 37444556 · Cancers (Basel) · 2023
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90/100
Generation of LexA enhancer-trap lines in Drosophila by an international scholastic network.
PMID 37279923 · G3 (Bethesda) · 2023
94/100
FAM3C/ILEI protein is elevated in psoriatic lesions and triggers psoriasiform hyperproliferation in mice.
PMID 37226685 · EMBO Mol Med · 2023
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Improving the annotation of the cattle genome by annotating transcription start sites in a diverse set of tissues and populations using Cap Analysis Gene Expres
PMID 37216666 · G3 (Bethesda) · 2023
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TransOrGAN: An Artificial Intelligence Mapping of Rat Transcriptomic Profiles between Organs, Ages, and Sexes.
PMID 37200521 · Chem Res Toxicol · 2023
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Intrinsic suppression of type I interferon production underlies the therapeutic efficacy of IL-15-producing natural killer cells in B-cell acute lymphoblastic l
PMID 37217248 · J Immunother Cancer · 2023
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Evaluation of core genome and whole genome multilocus sequence typing schemes for Campylobacter jejuni and Campylobacter coli outbreak detection i
PMID 37133905 · Microb Genom · 2023
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Single duplex DNA sequencing with CODEC detects mutations with high sensitivity.
PMID 37106072 · Nat Genet · 2023
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78/100
Improved eukaryotic detection compatible with large-scale automated analysis of metagenomes.
PMID 37032329 · Microbiome · 2023
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The selection of software and database for metagenomics sequence analysis impacts the outcome of microbial profiling and pathogen detection.
PMID 37027361 · PLoS One · 2023
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86/100
transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation.
PMID 37016291 · BMC Bioinformatics · 2023
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Chemical and genomic characterization of a potential probiotic treatment for stony coral tissue loss disease.
PMID 37024599 · Commun Biol · 2023
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85/100
Niche Modification by Sulfate-Reducing Bacteria Drives Microbial Community Assembly in Anoxic Marine Sediments.
PMID 36988509 · mBio · 2023
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Prioritized mass spectrometry increases the depth, sensitivity and data completeness of single-cell proteomics.
PMID 37012480 · Nat Methods · 2023
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90/100
Multiomic analysis of malignant pleural mesothelioma identifies molecular axes and specialized tumor profiles driving intertumor heterogeneity.
PMID 36928603 · Nat Genet · 2023
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Assessing the impacts of COVID-19 vaccination programme's timing and speed on health benefits, cost-effectiveness, and relative affordability in 27 African coun
PMID 36882868 · BMC Med · 2023
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89/100
Emergent dynamics of underlying regulatory network links EMT and androgen receptor-dependent resistance in prostate cancer.
PMID 36851919 · Comput Struct Biotechnol J · 2023
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78/100
Enteroendocrine cell lineages that differentially control feeding and gut motility.
PMID 36810133 · Elife · 2023
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88/100
Identification of genes influencing the evolution of Escherichia coli ST372 in dogs and humans.
PMID 36752777 · Microb Genom · 2023
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89/100
Transcriptome-wide analyses of piRNA binding sites suggest distinct mechanisms regulate piRNA binding and silencing in C. elegans.
PMID 36737102 · RNA · 2023
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88/100
maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks.
PMID 36719906 · PLoS Comput Biol · 2023
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98/100
QuasiFlow: a Nextflow pipeline for analysis of NGS-based HIV-1 drug resistance data.
PMID 36699347 · Bioinform Adv · 2022
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78/100
A temporal classifier predicts histopathology state and parses acute-chronic phasing in inflammatory bowel disease patients.
PMID 36694043 · Commun Biol · 2023
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83/100
Genomic insight into the influence of selection, crossbreeding, and geography on population structure in poultry.
PMID 36670351 · Genet Sel Evol · 2023
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Critical Role for the Human Cytomegalovirus Major Immediate Early Proteins in Recruitment of RNA Polymerase II and H3K27Ac To an Enhancer-Like Element in Ori
PMID 36645269 · Microbiol Spectr · 2023
93/100
Progressive transformation of the HIV-1 reservoir cell profile over two decades of antiviral therapy.
PMID 36596305 · Cell Host Microbe · 2023
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Depletion of HIV reservoir by activation of ISR signaling in resting CD4+T cells.
PMID 36590168 · iScience · 2022
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89/100
Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets.
PMID 36513983 · BMC Bioinformatics · 2022
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99/100
Characterization of protein isoform diversity in human umbilical vein endothelial cells via long-read proteogenomics.
PMID 36457147 · RNA Biol · 2022
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93/100
annotate_my_genomes: an easy-to-use pipeline to improve genome annotation and uncover neglected genes by hybrid RNA sequencing.
PMID 36472574 · Gigascience · 2022
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78/100
MirDIP 5.2: tissue context annotation and novel microRNA curation.
PMID 36453996 · Nucleic Acids Res · 2023
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89/100
Optimisation of the core subset for the APY approximation of genomic relationships.
PMID 36418945 · Genet Sel Evol · 2022
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85/100
Inferring a spatial code of cell-cell interactions across a whole animal body.
PMID 36395331 · PLoS Comput Biol · 2022
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90/100
The seeker R package: simplified fetching and processing of transcriptome data.
PMID 36389425 · PeerJ · 2022
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84/100
COXPRESdb v8: an animal gene coexpression database navigating from a global view to detailed investigations.
PMID 36350658 · Nucleic Acids Res · 2023
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84/100
Shared and unique phosphoproteomics responses in skeletal muscle from exercise models and in hyperammonemic myotubes.
PMID 36345342 · iScience · 2022
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100/100
Comparative Genomics of Listeria monocytogenes Isolates from Ruminant Listeriosis Cases in the Midwest United States.
PMID 36314928 · Microbiol Spectr · 2022
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91/100
Evolution and codon usage bias of mitochondrial and nuclear genomes in Aspergillus section Flavi.
PMID 36305682 · G3 (Bethesda) · 2023
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85/100
Functional differentiation determines the molecular basis of the symbiotic lifestyle of Ca. Nanohaloarchaeota.
PMID 36242054 · Microbiome · 2022
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Genome of the endangered Guatemalan Beaded Lizard, Heloderma charlesbogerti, reveals evolutionary relationships of squamates and declines in effective populatio⚑
PMID 36226801 · G3 (Bethesda) · 2022
84/100
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OSeMOSYS Global, an open-source, open data global electricity system model generator.
PMID 36241673 · Sci Data · 2022
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The GATA factor ELT-3 specifies endoderm in Caenorhabditis angaria in an ancestral gene network.
PMID 36196618 · Development · 2022
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AI-assisted discovery of an ethnicity-influenced driver of cell transformation in esophageal and gastroesophageal junction adenocarcinomas.
PMID 36134663 · JCI Insight · 2022
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84/100
Whole-Genome Sequence of Cervid atadenovirus A from the Initial Cases of an Adenovirus Hemorrhagic Disease Epizootic of Black-Tailed Deer in Canada.
PMID 36129291 · Microbiol Resour Announc · 2022
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Genome Sequencing of Methicillin-Resistant and Methicillin-Susceptible Mammaliicoccus sciuri from Diseased Animals.
PMID 36125295 · Microbiol Resour Announc · 2022
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92/100
Massively parallel genomic perturbations with multi-target CRISPR interrogates Cas9 activity and DNA repair at endogenous sites.
PMID 36064968 · Nat Cell Biol · 2022
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98/100
Assessment of genotyping array performance for genome-wide association studies and imputation in African cattle.
PMID 36057548 · Genet Sel Evol · 2022
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