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609 matching publication(s)
pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive.
PMID 31114675 · F1000Res · 2019
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pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS).
PMID 31035919 · BMC Bioinformatics · 2019
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Widespread nitrous oxide undersaturation in farm waterbodies creates an unexpected greenhouse gas sink.
PMID 31036633 · Proc Natl Acad Sci U S A · 2019
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Translation affects mRNA stability in a codon-dependent manner in human cells.
PMID 31012849 · Elife · 2019
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87/100
PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data.
PMID 30951143 · Database (Oxford) · 2019
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A genome-wide association analysis identifies 16 novel susceptibility loci for carpal tunnel syndrome.
PMID 30833571 · Nat Commun · 2019
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The exonuclease Xrn1 activates transcription and translation of mRNAs encoding membrane proteins.
PMID 30899024 · Nat Commun · 2019
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CellFishing.jl: an ultrafast and scalable cell search method for single-cell RNA sequencing.
PMID 30744683 · Genome Biol · 2019
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PI3K inhibitors protect against glucocorticoid-induced skin atrophy.
PMID 30737086 · EBioMedicine · 2019
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Genomic approaches used to investigate an atypical outbreak of Salmonella Adjame.
PMID 30648934 · Microb Genom · 2019
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SMAGEXP: a galaxy tool suite for transcriptomics data meta-analysis.
PMID 30698691 · Gigascience · 2019
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GC-biased gene conversion conceals the prediction of the nearly neutral theory in avian genomes.
PMID 30616647 · Genome Biol · 2019
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Insights into the Evolution of the New World Diploid Cottons (Gossypium, Subgenus Houzingenia) Based on Genome Sequencing.
PMID 30476109 · Genome Biol Evol · 2019
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Predicting position along a looping immune response trajectory.
PMID 30296270 · PLoS One · 2018
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Transcriptomic and functional analyses of the piRNA pathway in the Chagas disease vector Rhodnius prolixus.
PMID 30303955 · PLoS Negl Trop Dis · 2018
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Firefly genomes illuminate parallel origins of bioluminescence in beetles.
PMID 30324905 · Elife · 2018
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Genomic Description of 'Candidatus Abyssubacteria,' a Novel Subsurface Lineage Within the Candidate Phylum Hydrogenedentes.
PMID 30210471 · Front Microbiol · 2018
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miRge 2.0 for comprehensive analysis of microRNA sequencing data.
PMID 30153801 · BMC Bioinformatics · 2018
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Metabolite-Centric Reporter Pathway and Tripartite Network Analysis of Arabidopsis Under Cold Stress.
PMID 30258841 · Front Bioeng Biotechnol · 2018
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Immuno-detection by sequencing enables large-scale high-dimensional phenotyping in cells.
PMID 29921844 · Nat Commun · 2018
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Whole genome and transcriptome maps of the entirely black native Korean chicken breed Yeonsan Ogye.
PMID 30010758 · Gigascience · 2018
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MetaMap: an atlas of metatranscriptomic reads in human disease-related RNA-seq data.
PMID 29901703 · Gigascience · 2018
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Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation.
PMID 29783948 · BMC Genomics · 2018
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The Cohesin Ring Uses Its Hinge to Organize DNA Using Non-topological as well as Topological Mechanisms.
PMID 29754816 · Cell · 2018
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Verrucomicrobia are prevalent in north-temperate freshwater lakes and display class-level preferences between lake habitats.
PMID 29590198 · PLoS One · 2018
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Single-cell transcriptional dynamics of flavivirus infection.
PMID 29451494 · Elife · 2018
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Invasive bacterial disease trends and characterization of group B streptococcal isolates among young infants in southern Mozambique, 2001-2015.
PMID 29351318 · PLoS One · 2018
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Viral Diagnostics in Plants Using Next Generation Sequencing: Computational Analysis in Practice.
PMID 29123534 · Front Plant Sci · 2017
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Genome-wide identification of conserved and novel microRNAs in one bud and two tender leaves of tea plant (Camellia sinensis) by small RNA sequencing, microarra
PMID 29157210 · BMC Plant Biol · 2017
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Genome-wide prediction of DNase I hypersensitivity using gene expression.
PMID 29051481 · Nat Commun · 2017
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Large-Scale Phylogenomics of the Lactobacillus casei Group Highlights Taxonomic Inconsistencies and Reveals Novel Clade-Associated Features.
PMID 28845461 · mSystems · 2017
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A cross-species approach to identify transcriptional regulators exemplified for Dnajc22 and Hnf4a.
PMID 28642491 · Sci Rep · 2017
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Cell fixation and preservation for droplet-based single-cell transcriptomics.
PMID 28526029 · BMC Biol · 2017
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Activity of distinct growth factor receptor network components in breast tumors uncovers two biologically relevant subtypes.
PMID 28446242 · Genome Med · 2017
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Distributed biotin-streptavidin transcription roadblocks for mapping cotranscriptional RNA folding.
PMID 28398514 · Nucleic Acids Res · 2017
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Determining virus-host interactions and glycerol metabolism profiles in geographically diverse solar salterns with metagenomics.
PMID 28097058 · PeerJ · 2017
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DFAST and DAGA: web-based integrated genome annotation tools and resources.
PMID 27867804 · Biosci Microbiota Food Health · 2016
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Metavisitor, a Suite of Galaxy Tools for Simple and Rapid Detection and Discovery of Viruses in Deep Sequence Data.
PMID 28045932 · PLoS One · 2017
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Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations a
PMID 27832824 · Genome Biol · 2016
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Roar: detecting alternative polyadenylation with standard mRNA sequencing libraries.
PMID 27756200 · BMC Bioinformatics · 2016
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Identification and Characterization of Small Noncoding RNAs in Genome Sequences of the Edible Fungus Pleurotus ostreatus.
PMID 27703969 · Biomed Res Int · 2016
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A robust data scaling algorithm to improve classification accuracies in biomedical data.
PMID 27612635 · BMC Bioinformatics · 2016
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Representing and querying disease networks using graph databases.
PMID 27462371 · BioData Min · 2016
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Phenotypic and Genotypic Characteristics of Shiga Toxin-Producing Escherichia coli Isolated from Surface Waters and Sediments in a Canadian Urban-Agricultural L
PMID 27092297 · Front Cell Infect Microbiol · 2016
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AuPairWise: A Method to Estimate RNA-Seq Replicability through Co-expression.
PMID 27082953 · PLoS Comput Biol · 2016
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CoINcIDE: A framework for discovery of patient subtypes across multiple datasets.
PMID 26961683 · Genome Med · 2016
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Gene-expression patterns in peripheral blood classify familial breast cancer susceptibility.
PMID 26538066 · BMC Med Genomics · 2015
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