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32 matching publication(s)

Publication	Journal	Year	Score	Verdict
Prognostic biomarker discovery in pancreatic cancer through hybrid ensemble feature selection and multi-omics data. PMID 41957754	BioData Min	2026	92	L1 92/100
Machine learning and free energy clustering reveal PAH protein binding linked to AD risk. PMID 41953002	iScience	2026	78	L1 78/100
Prediction, syntax and semantic grounding in the brain and large language models. PMID 41807493	Sci Rep	2026	86	L1 86/100
ConNIS and labeling instability: New statistical methods for improving the detection of essential genes in TraDIS libraries. PMID 41790830	PLoS Comput Biol	2026	83	L1 83/100
MCPmed: a call for Model Context Protocol-enabled bioinformatics web services for LLM-driven discovery. ⚑ PMID 41729821	Brief Bioinform	2026	80	L1 80/100 ⚑
stDyer-image improves clustering analysis of spatially resolved transcriptomics and proteomics with morphological images. PMID 41692960	Bioinformatics	2026	75	L1 75/100
Spatial information matters: are traditional imputation methods effective for spatial transcriptomics data? PMID 41627342	Brief Bioinform	2026	89	L1 89/100
Smart spatial omics (S2-omics) optimizes region of interest selection to capture molecular heterogeneity in diverse tissues. PMID 41298871	Nat Cell Biol	2025	100	L1 100/100
Public Omics Explorer (POE): Enabling integrative semantic search across GEO omics datasets based on PubMed publications. PMID 41282419	Comput Struct Biotechnol J	2025	83	L1 83/100
The systematic assessment of completeness of public metadata accompanying omics studies in the Gene Expression Omnibus data repository. PMID 40926267	Genome Biol	2025	99	L1 99/100
Enhanced Generalizability of RNA Secondary Structure Prediction via Convolutional Block Attention Network and Ensemble Learning. PMID 40871599	Molecules	2025	87	L1 87/100
randPedPCA: rapid approximation of principal components from large pedigrees. PMID 40877802	Genet Sel Evol	2025	84	L1 84/100
Chemist: A Domain-Specific Language by Chemists for Chemists. PMID 40815845	J Phys Chem A	2025	89	89/100
Improving genomic prediction accuracy for methane emission and feed efficiency in sheep: integrating rumen microbial PCA with host genomic variation using neura PMID 40676527	Genet Sel Evol	2025	85	L1 85/100
ChIP-seq Data Processing and Relative and Quantitative Signal Normalization for Saccharomyces cerevisiae. PMID 40364978	Bio Protoc	2025	100	L1 100/100
Protocol for assessing regulatory elements in murine heart using an AAV9-based massively parallel reporter assay. PMID 40252222	STAR Protoc	2025	93	L1 93/100
GeneSetCart: assembling, augmenting, combining, visualizing, and analyzing gene sets. ⚑ PMID 40208796	Gigascience	2025	76	L1 76/100 ⚑
scSAMAC: saliency-adjusted masking induced attention contrastive learning for single-cell clustering. PMID 40131310	Brief Bioinform	2025	85	L1 85/100
Single-Cell Hi-C Technologies and Computational Data Analysis. PMID 39887949	Adv Sci (Weinh)	2025	80	L1 80/100
Revealing the critical state and identifying individualized dynamic network biomarker for type 2 diabetes through advanced analysis methods on individual basis. PMID 39890881	Sci Rep	2025	75	L1 75/100
Multiomic machine learning on lactylation for molecular typing and prognosis of lung adenocarcinoma. PMID 39856156	Sci Rep	2025	83	L1 83/100
Correcting scale distortion in RNA sequencing data. PMID 39875825	BMC Bioinformatics	2025	76	L1 76/100
Protocol for the generation of single-nuclei RNA-seq libraries and quantification of heterogeneous cell types activated during social interaction. PMID 39423127	STAR Protoc	2024	78	L1 78/100
Analytical code sharing practices in biomedical research. PMID 38983240	PeerJ Comput Sci	2024	92	L1 92/100
Forseti: a mechanistic and predictive model of the splicing status of scRNA-seq reads. PMID 38940130	Bioinformatics	2024	87	L1 87/100
PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testin PMID 38860884	Microb Genom	2024	75	L1 75/100
SurvConvMixer: robust and interpretable cancer survival prediction based on ConvMixer using pathway-level gene expression images. PMID 38539106	BMC Bioinformatics	2024	77	L1 77/100
ResnetAge: A Resnet-Based DNA Methylation Age Prediction Method. PMID 38247911	Bioengineering (Basel)	2023	75	L1 75/100
SEAseq: a portable and cloud-based chromatin occupancy analysis suite. PMID 35193506	BMC Bioinformatics	2022	94	L1 94/100
Gene Expression Analysis Platform (GEAP): A highly customizable, fast, versatile and ready-to-use microarray analysis platform. PMID 34927664	Genet Mol Biol	2021	83	L1 83/100
Computationally scalable regression modeling for ultrahigh-dimensional omics data with ParProx. PMID 34254998	Brief Bioinform	2021	79	L1 79/100
SMAGEXP: a galaxy tool suite for transcriptomics data meta-analysis. PMID 30698691	Gigascience	2019	82	L1 82/100