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Evaluating genome sequencing strategies: trio, singleton, and standard testing in rare disease diagnosis
PMID 40963120 · Genome Medicine · 2025
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The systematic assessment of completeness of public metadata accompanying omics studies in the Gene Expression Omnibus data repository.
PMID 40926267 · Genome Biol · 2025
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99/100
Enhanced Generalizability of RNA Secondary Structure Prediction via Convolutional Block Attention Network and Ensemble Learning.
PMID 40871599 · Molecules · 2025
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87/100
randPedPCA: rapid approximation of principal components from large pedigrees.
PMID 40877802 · Genet Sel Evol · 2025
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84/100
Identification of Key Differentially Expressed Genes in Arabidopsis thaliana Under Short- and Long-Term High Light Stress.
PMID 40869111 · Int J Mol Sci · 2025
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Multi-omic identification of perineurial hyperplasia and lipid-associated nerve macrophages in human polyneuropathies.
PMID 40849297 · Nat Commun · 2025
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Chemist: A Domain-Specific Language by Chemists for Chemists.
PMID 40815845 · J Phys Chem A · 2025
89/100
Precise modulation of BRG1 levels reveals features of mSWI/SNF dosage sensitivity.
PMID 40846763 · Nat Genet · 2025
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Cell type differences in human cytomegalovirus transcription and epigenetic regulation with insights into major immediate-early enhancer-promoter control.
PMID 40758707 · PLoS Pathog · 2025
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Metabolic reprogramming and prognostic insights in molecular landscapes driven by glycolysis in ovarian cancer.
PMID 40707588 · Sci Rep · 2025
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77/100
In vivo prime editing rescues alternating hemiplegia of childhood in mice.
PMID 40695277 · Cell · 2025
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Transcriptome-Proteome Profiling in Burkholderia thailandensis during the Transition from Exponential to Stationary Phase.
PMID 40680064 · J Proteome Res · 2025
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Single-cell RNA-sequencing highlights a curtailed NK cell function in convalescent COVID-19 pregnant women.
PMID 40661959 · Front Immunol · 2025
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Improving genomic prediction accuracy for methane emission and feed efficiency in sheep: integrating rumen microbial PCA with host genomic variation using neura
PMID 40676527 · Genet Sel Evol · 2025
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85/100
Temporal control of progenitor competence shapes maturation in GABAergic neuron development in mice.
PMID 40629142 · Nat Neurosci · 2025
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Author Correction: Next-generation phenotyping integrated in a national framework for patients with ultrarare disorders improves genetic diagnostics and yields new molecular findings
PMID 40555819 · Nature Genetics (Author Correction 2025; orig 2024;56:1644) · 2025
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Gut-derived Lactobacillus from exceptional responders mitigates chemoradiotherapy-induced intestinal injury through methionine-driven epigene⚑
PMID 40469520 · Imeta · 2025
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89/100
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Multimodal data integration for biologically-relevant artificial intelligence to guide adjuvant chemotherapy in stage II colorectal cancer.
PMID 40472802 · EBioMedicine · 2025
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83/100
An engineered tumor organoid model reveals cellular identity and signaling trajectories underlying SFPQ-TFE3 driven translocation RCC.
PMID 40463960 · iScience · 2025
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Elucidating the Prognostic and Therapeutic Implications of Insulin Resistance Genes in Breast Cancer: A Machine Learning-Powered Analysis.
PMID 40427728 · Biology (Basel) · 2025
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84/100
Genomic profiling of Streptococcus agalactiae (Group B Streptococcus) isolates from pregnant women in northeastern Mexico:
PMID 40416609 · PeerJ · 2025
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84/100
Sequential structure probing of cotranscriptional RNA folding intermediates.
PMID 40450030 · Nat Commun · 2025
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77/100
ChIP-seq Data Processing and Relative and Quantitative Signal Normalization for Saccharomyces cerevisiae.
PMID 40364978 · Bio Protoc · 2025
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100/100
Synthesis of transcriptomic studies reveals a core response to heat stress in abalone (genus Haliotis).
PMID 40361012 · BMC Genomics · 2025
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Tracing human genetic histories and natural selection with precise local ancestry inference.
PMID 40379651 · Nat Commun · 2025
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A haplotype-resolved genome assembly of the bocaccio rockfish, Sebastes paucispinis.
PMID 40323688 · J Hered · 2025
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Covalent binding of thioredoxin to TXNIP is required for diet-induced insulin resistance in the liver.
PMID 40345590 · J Biol Chem · 2025
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Integrated bioinformatics analysis screened the key genes and pathways of idiopathic pulmonary fibrosis.
PMID 40280949 · Sci Rep · 2025
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The Drosophila estrogen-related receptor promotes triglyceride storage within the larval fat body.
PMID 40288680 · J Lipid Res · 2025
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Protocol for assessing regulatory elements in murine heart using an AAV9-based massively parallel reporter assay.
PMID 40252222 · STAR Protoc · 2025
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Dynamic interaction of MYC enhancer RNA with YEATS2 protein regulates MYC gene transcription in pancreatic cancer.
PMID 40216980 · EMBO Rep · 2025
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GRAMD1B is a regulator of lipid homeostasis, autophagic flux and phosphorylated tau.
PMID 40204713 · Nat Commun · 2025
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91/100
Comprehensive benchmarking of large language models for RNA secondary structure prediction.
PMID 40205851 · Brief Bioinform · 2025
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GeneSetCart: assembling, augmenting, combining, visualizing, and analyzing gene sets.⚑
PMID 40208796 · Gigascience · 2025
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High performance imputation of structural and single nucleotide variants using low-coverage whole genome sequencing.
PMID 40155798 · Genet Sel Evol · 2025
85/100
SIRE 2.0: a novel method for estimating polygenic host effects underlying infectious disease transmission, and analytical expressions for prediction accuracies.
PMID 40169992 · Genet Sel Evol · 2025
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Hypoxia-associated genes as predictors of outcomes in gastric cancer: a genomic approach.
PMID 40129974 · Front Immunol · 2025
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96/100
Streaming Long-Read Sequence Alignments for HLA Predictions Using HLAminer.
PMID 40145684 · Curr Protoc · 2025
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90/100
scSAMAC: saliency-adjusted masking induced attention contrastive learning for single-cell clustering.
PMID 40131310 · Brief Bioinform · 2025
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85/100
Mouse-Geneformer: A deep learning model for mouse single-cell transcriptome and its cross-species utility.
PMID 40106407 · PLoS Genet · 2025
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95/100
TGF-β-mediated activation of fibroblasts in cervical cancer: implications for tumor microenvironment and prognosis.
PMID 40124621 · PeerJ · 2025
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79/100
What defines a photosynthetic microbial mat in western Antarctica?
PMID 40043057 · PLoS One · 2025
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85/100
Deubiquitination enzyme USP35 negatively regulates MAVS signaling to inhibit anti-tumor immunity.
PMID 40016186 · Cell Death Dis · 2025
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7SL RNA and signal recognition particle orchestrate a global cellular response to acute thermal stress.
PMID 39952919 · Nat Commun · 2025
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93/100
Optimal Dual RNA-Seq Mapping for Accurate Pathogen Detection in Complex Eukaryotic Hosts.
PMID 39959292 · Bio Protoc · 2025
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Statistical framework for calling allelic imbalance in high-throughput sequencing data.
PMID 39966391 · Nat Commun · 2025
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Direct observations of cross-scale wave-particle energy transfer in space plasmas.
PMID 39919183 · Sci Adv · 2025
94/100
Multi-INTACT: integrative analysis of the genome, transcriptome, and proteome identifies causal mechanisms of complex traits.
PMID 39901160 · Genome Biol · 2025
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Single-Cell Hi-C Technologies and Computational Data Analysis.
PMID 39887949 · Adv Sci (Weinh) · 2025
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Revealing the critical state and identifying individualized dynamic network biomarker for type 2 diabetes through advanced analysis methods on individual basis.
PMID 39890881 · Sci Rep · 2025
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75/100