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56 matching publication(s)
A consensus approach to vertebrate de novo transcriptome assembly from RNA-seq data: assembly of the duck (Anas platyrhynchos) transcriptome.
PMID 25009556 · Front Genet · 2014
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LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq.
PMID 24709818 · Genome Res · 2014
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Does excitatory fronto-extracerebral tDCS lead to improved working memory performance?
PMID 24555105 · F1000Res · 2013
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61/100
Cyrface: An interface from Cytoscape to R that provides a user interface to R packages.
PMID 24715956 · F1000Res · 2013
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67/100
Combining evidence of preferential gene-tissue relationships from multiple sources.
PMID 23950964 · PLoS One · 2013
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53/100
Hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data.
PMID 24211736 · Methods · 2013
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RNAseq analysis of the parasitic nematode Strongyloides stercoralis reveals divergent regulation of canonical dauer pathways.
PMID 23145190 · PLoS Negl Trop Dis · 2012
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Endogenous retroviral elements LTR8B and MER65 rewire PSG9 regulation to control trophoblast syncytialization and pre-eclampsia risk.
PMID 41796334 · Genome Biol · 2026
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comBO: A combined human bone and lympho-myeloid bone marrow organoid for preclinical modeling of hematopoietic disorders.
PMID 41734765 · Cell Stem Cell · 2026
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A blood-based DNA damage signature in patients with Parkinson's disease is associated with disease progression.
PMID 40913219 · Nat Aging · 2025
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Enforced MYC expression directs a distinct transcriptional state during plasma cell differentiation.
PMID 40721291 · Life Sci Alliance · 2025
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74/100
COVID-19 vaccination atlas using an integrative systems vaccinology approach.
PMID 40456760 · NPJ Vaccines · 2025
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MACanalyzeR scRNAseq analysis tool reveals PPARγHIGH/GDF15HIGH lipid-associated macrophages facilitate thermogenic⚑
PMID 40450001 · Nat Commun · 2025
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Revealing an unexpectedly low electron injection threshold via reinforced shock acceleration.
PMID 39805850 · Nat Commun · 2025
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Community assessment of methods to deconvolve cellular composition from bulk gene expression.
PMID 39191725 · Nat Commun · 2024
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An atlas of the human liver diurnal transcriptome and its perturbation by hepatitis C virus infection.
PMID 39209804 · Nat Commun · 2024
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Characterizing Neutrophil Subtypes in Cancer Using scRNA Sequencing Demonstrates the Importance of IL1β/CXCR2 Axis in Generation of Metastasis-specific Neutroph
PMID 38358352 · Cancer Res Commun · 2024
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Design of a targeted blood transcriptional panel for monitoring immunological changes accompanying pregnancy.
PMID 38352867 · Front Immunol · 2024
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Microglia maintain structural integrity during fetal brain morphogenesis.
PMID 38309258 · Cell · 2024
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Loss of CD4+ T cell-intrinsic arginase 1 accelerates Th1 response kinetics and reduces lung pathology during influenza infection.
PMID 37572656 · Immunity · 2023
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Integrative bioinformatics and artificial intelligence analyses of transcriptomics data identified genes associated with major depressive disorders including <i
PMID 37583471 · Neurobiol Stress · 2023
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A computationally-enhanced hiCLIP atlas reveals Staufen1-RNA binding features and links 3' UTR structure to RNA metabolism.
PMID 37013995 · Nucleic Acids Res · 2023
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Widespread allele-specific topological domains in the human genome are not confined to imprinted gene clusters.
PMID 36869353 · Genome Biol · 2023
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Social complexity, life-history and lineage influence the molecular basis of castes in vespid wasps.⚑
PMID 36828829 · Nat Commun · 2023
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Perturbation of placental protein glycosylation by endoplasmic reticulum stress promotes maladaptation of maternal hepatic glucose metabolism.
PMID 36660474 · iScience · 2022
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The rates of adult neurogenesis and oligodendrogenesis are linked to cell cycle regulation through p27-dependent gene repression of SOX2.
PMID 36627412 · Cell Mol Life Sci · 2023
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N6-methyladenosine (m6A) reader Pho92 is recruited co-transcriptionally and couples translation to mRNA decay to promote meiotic fitness in y⚑
PMID 36422864 · Elife · 2022
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The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms.
PMID 36262335 · F1000Res · 2022
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A feed-forward pathway drives LRRK2 kinase membrane recruitment and activation.
PMID 36149401 · Elife · 2022
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High-throughput sequencing SELEX for the determination of DNA-binding protein specificities in vitro.
PMID 35776646 · STAR Protoc · 2022
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Implementing the reuse of public DIA proteomics datasets: from the PRIDE database to Expression Atlas.
PMID 35701420 · Sci Data · 2022
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Deconvolution of the hematopoietic stem cell microenvironment reveals a high degree of specialization and conservation.
PMID 35494238 · iScience · 2022
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The HCV Envelope Glycoprotein Down-Modulates NF-κB Signalling and Associates With Stimulation of the Host Endoplasmic Reticulum Stress Pathway.
PMID 35371105 · Front Immunol · 2022
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Harnessing secretory pathway differences between HEK293 and CHO to rescue production of difficult to express proteins.
PMID 35301123 · Metab Eng · 2022
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snpQT: flexible, reproducible, and comprehensive quality control and imputation of genomic data.⚑
PMID 34900230 · F1000Res · 2021
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RNA modifications detection by comparative Nanopore direct RNA sequencing.
PMID 34893601 · Nat Commun · 2021
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Candidates for Balancing Selection in Leishmania donovani Complex Parasites.
PMID 34865011 · Genome Biol Evol · 2021
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Defactinib inhibits PYK2 phosphorylation of IRF5 and reduces intestinal inflammation.
PMID 34795257 · Nat Commun · 2021
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Loss of mutual protection between human osteoclasts and chondrocytes in damaged joints initiates osteoclast-mediated cartilage degradation by MMPs.
PMID 34811438 · Sci Rep · 2021
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Essential Genes of Vibrio anguillarum and Other Vibrio spp. Guide the Development of New Drugs and Vaccines.
PMID 34745063 · Front Microbiol · 2021
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Estimates of recent and historical effective population size in turbot, seabream, seabass and carp selective breeding programmes.
PMID 34742227 · Genet Sel Evol · 2021
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Meta-analysis of COVID-19 single-cell studies confirms eight key immune responses.
PMID 34675242 · Sci Rep · 2021
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metaGEM: reconstruction of genome scale metabolic models directly from metagenomes.
PMID 34614189 · Nucleic Acids Res · 2021
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MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction.
PMID 34172000 · BMC Genomics · 2021
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Trem2 promotes anti-inflammatory responses in microglia and is suppressed under pro-inflammatory conditions.
PMID 32959884 · Hum Mol Genet · 2020
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A crowdsourced set of curated structural variants for the human genome.
PMID 32559231 · PLoS Comput Biol · 2020
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Improved precision of epigenetic clock estimates across tissues and its implication for biological ageing.
PMID 31443728 · Genome Med · 2019
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