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40 matching publication(s)

Publication	Journal	Year	Score	Verdict
COVID-19 lung disease shares driver AT2 cytopathic features with Idiopathic pulmonary fibrosis. PMID 35870428	EBioMedicine	2022	85	L1 85/100
Distinct senotypes in p16- and p21-positive cells across human and mouse aging tissues. PMID 41162753	EMBO J	2025	50	L1 50/100
Revealing an unexpectedly low electron injection threshold via reinforced shock acceleration. PMID 39805850	Nat Commun	2025	68	L1 68/100
RummaGEO: Automatic mining of human and mouse gene sets from GEO. PMID 39569206	Patterns (N Y)	2024	63	L1 63/100
Community assessment of methods to deconvolve cellular composition from bulk gene expression. PMID 39191725	Nat Commun	2024	63	L1 63/100
The manganese transporter SLC39A8 links alkaline ceramidase 1 to inflammatory bowel disease. ⚑ PMID 38839750	Nat Commun	2024	70	L1 70/100 ⚑
The soil microbiome modulates the sorghum root metabolome and cellular traits with a concomitant reduction of Striga infection. PMID 38537644	Cell Rep	2024	62	L1 62/100
Ion-Scale Magnetic Flux Rope Generated From Electron-Scale Magnetopause Current Sheet: Magnetospheric Multiscale Observations. PMID 38440152	J Geophys Res Space Phys	2023	68	L1 68/100
Inflammatory Bone Marrow Mesenchymal Stem Cells in Multiple Myeloma: Transcriptional Signature and In Vitro Modeling. PMID 37958322	Cancers (Basel)	2023	50	L1 50/100
Identification of herpesvirus transcripts from genomic regions around the replication origins. PMID 37773348	Sci Rep	2023	59	L1 59/100
Loss of CD4+ T cell-intrinsic arginase 1 accelerates Th1 response kinetics and reduces lung pathology during influenza infection. PMID 37572656	Immunity	2023	68	L1 68/100
Clinical and molecular correlation defines activity of physiological pathways in life-sustaining kidney xenotransplantation. PMID 37311769	Nat Commun	2023	69	L1 69/100
Exploiting convergent phenotypes to derive a pan-cancer cisplatin response gene expression signature. PMID 37076665	NPJ Precis Oncol	2023	50	L1 50/100
Extensive androgen receptor enhancer heterogeneity in primary prostate cancers underlies transcriptional diversity and metastatic potential. PMID 36450752	Nat Commun	2022	70	L1 70/100
Spatial transcriptomics demonstrates the role of CD4 T cells in effector CD8 T cell differentiation during chronic viral infection. PMID 36450262	Cell Rep	2022	50	L1 50/100
CHD7 regulates otic lineage specification and hair cell differentiation in human inner ear organoids. PMID 36396635	Nat Commun	2022	50	L1 50/100
Stromal androgen signaling acts as tumor niches to drive prostatic basal epithelial progenitor-initiated oncogenesis. ⚑ PMID 36323713	Nat Commun	2022	63	L1 63/100 ⚑
CASK loss of function differentially regulates neuronal maturation and synaptic function in human induced cortical excitatory neurons. PMID 36262316	iScience	2022	62	L1 62/100
Downstream high-speed plasma jet generation as a direct consequence of shock reformation. PMID 35105885	Nat Commun	2022	67	L1 67/100
Systematic identification of ACE2 expression modulators reveals cardiomyopathy as a risk factor for mortality in COVID-19 patients. PMID 35012625	Genome Biol	2022	68	L1 68/100
Gene Set Enrichment Analysis Reveals Individual Variability in Host Responses in Tuberculosis Patients. PMID 34421903	Front Immunol	2021	71	71/100
A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells. PMID 34426512	Genome Res	2021	57	L1 57/100
Creation of a Single Cell RNASeq Meta-Atlas to Define Human Liver Immune Homeostasis. ⚑ PMID 34335581	Front Immunol	2021	63	L1 63/100 ⚑
GAUGE-Annotated Microbial Transcriptomic Data Facilitate Parallel Mining and High-Throughput Reanalysis To Form Data-Driven Hypotheses. PMID 33758032	mSystems	2021	70	L1 70/100
Regulatory and evolutionary adaptation of yeast to acute lethal ethanol stress. PMID 33170850	PLoS One	2020	68	L1 68/100
Metabolic profiling during malaria reveals the role of the aryl hydrocarbon receptor in regulating kidney injury. PMID 33021470	Elife	2020	62	L1 62/100
A crowdsourced set of curated structural variants for the human genome. PMID 32559231	PLoS Comput Biol	2020	71	L1 71/100
In vivo microscopy reveals macrophage polarization locally promotes coherent microtubule dynamics in migrating cancer cells. PMID 32665556	Nat Commun	2020	50	L1 50/100
Equivalent change enrichment analysis: assessing equivalent and inverse change in biological pathways between diverse experiments. ⚑ PMID 32093613	BMC Genomics	2020	62	L1 62/100 ⚑
Integrative network modeling reveals mechanisms underlying T cell exhaustion. PMID 32024856	Sci Rep	2020	59	L1 59/100
Regulatory Noncoding Small RNAs Are Diverse and Abundant in an Extremophilic Microbial Community. ⚑ PMID 32019831	mSystems	2020	57	L1 57/100 ⚑
PulmonDB: a curated lung disease gene expression database. ⚑ PMID 31949184	Sci Rep	2020	53	L1 53/100 ⚑
Wx: a neural network-based feature selection algorithm for transcriptomic data. PMID 31324856	Sci Rep	2019	50	L1 50/100
Comparing time series transcriptome data between plants using a network module finding algorithm. PMID 31164912	Plant Methods	2019	59	L1 59/100
Integrating herbarium specimen observations into global phenology data systems. PMID 30937223	Appl Plant Sci	2019	60	L1 60/100
A methyl-sensitive element induces bidirectional transcription in TATA-less CpG island-associated promoters. PMID 30332484	PLoS One	2018	63	L1 63/100
Cancer-predicting transcriptomic and epigenetic signatures revealed for ulcerative colitis in patient-derived epithelial organoids. PMID 29983891	Oncotarget	2018	65	L1 65/100
Wide-Open: Accelerating public data release by automating detection of overdue datasets. PMID 28594819	PLoS Biol	2017	74	L1 74/100
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study. PMID 27583132	F1000Res	2016	74	L1 74/100
Integrative analyses reveal signaling pathways underlying familial breast cancer susceptibility. PMID 26969729	Mol Syst Biol	2016	67	L1 67/100