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441 matching publication(s)

Publication	Journal	Year	Score	Verdict
MZPAQ: a FASTQ data compression tool. PMID 31171931	Source Code Biol Med	2019	58	L1 58/100
GREIN: An Interactive Web Platform for Re-analyzing GEO RNA-seq Data. PMID 31110304	Sci Rep	2019	73	L1 73/100
Transcriptome maps of general eukaryotic RNA degradation factors. PMID 31135339	Elife	2019	60	L1 60/100
Parsimonious Gene Correlation Network Analysis (PGCNA): a tool to define modular gene co-expression for refined molecular stratification in cancer. PMID 30993001	NPJ Syst Biol Appl	2019	71	L1 71/100
Predicting enhancers in mammalian genomes using supervised hidden Markov models. PMID 30917778	BMC Bioinformatics	2019	70	L1 70/100
Integrating herbarium specimen observations into global phenology data systems. PMID 30937223	Appl Plant Sci	2019	60	L1 60/100
The effect of 16S rRNA region choice on bacterial community metabarcoding results. PMID 30720800	Sci Data	2019	59	L1 59/100
Complete Genome Sequencing of Lactobacillus plantarum ZLP001, a Potential Probiotic That Enhances Intestinal Epithelial Barrier Function and Defense Agai PMID 30542296	Front Physiol	2018	68	L1 68/100
Yap1 safeguards mouse embryonic stem cells from excessive apoptosis during differentiation. PMID 30561326	Elife	2018	50	L1 50/100
A methyl-sensitive element induces bidirectional transcription in TATA-less CpG island-associated promoters. PMID 30332484	PLoS One	2018	63	L1 63/100
Comparative analysis of circular RNAs between soybean cytoplasmic male-sterile line NJCMS1A and its maintainer NJCMS1B by high-throughput sequencing. PMID 30208848	BMC Genomics	2018	50	50/100
Cancer-predicting transcriptomic and epigenetic signatures revealed for ulcerative colitis in patient-derived epithelial organoids. PMID 29983891	Oncotarget	2018	65	L1 65/100
Genome-wide screening of potential RNase Y-processed mRNAs in the M49 serotype Streptococcus pyogenes NZ131. ⚑ PMID 29900693	Microbiologyopen	2018	57	L1 57/100 ⚑
Nimbus: a design-driven analyses suite for amplicon-based NGS data. PMID 29538618	Bioinformatics	2018	64	L1 64/100
Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data. PMID 29420797	Nucleic Acids Res	2018	68	L1 68/100
Proteogenomic analysis prioritises functional single nucleotide variants in cancer samples. ⚑ PMID 29221171	Oncotarget	2017	73	73/100 ⚑
Analysis of the genome of the New Zealand giant collembolan (Holacanthella duospinosa) sheds light on hexapod evolution. PMID 29041914	BMC Genomics	2017	72	L1 72/100
Viewing RNA-seq data on the entire human genome. PMID 28979763	F1000Res	2017	50	L1 50/100
Wide-Open: Accelerating public data release by automating detection of overdue datasets. PMID 28594819	PLoS Biol	2017	74	L1 74/100
Newborn sex-specific transcriptome signatures and gestational exposure to fine particles: findings from the ENVIRONAGE birth cohort. PMID 28583124	Environ Health	2017	71	L1 71/100
Bayesian prediction of RNA translation from ribosome profiling. ⚑ PMID 28126919	Nucleic Acids Res	2017	62	62/100 ⚑
Evidence for L1-associated DNA rearrangements and negligible L1 retrotransposition in glioblastoma multiforme. PMID 27843499	Mob DNA	2016	67	67/100
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study. PMID 27583132	F1000Res	2016	74	L1 74/100
Spatial organization shapes the turnover of a bacterial transcriptome. PMID 27198188	Elife	2016	71	L1 71/100
Gene-Expression Profiling Suggests Impaired Signaling via the Interferon Pathway in Cstb-/- Microglia. ⚑ PMID 27355630	PLoS One	2016	54	54/100 ⚑
Integrative analyses reveal signaling pathways underlying familial breast cancer susceptibility. PMID 26969729	Mol Syst Biol	2016	67	L1 67/100
HGA: de novo genome assembly method for bacterial genomes using high coverage short sequencing reads. ⚑ PMID 26945881	BMC Genomics	2016	58	58/100 ⚑
Phylogenetic analysis of higher-level relationships within Hydroidolina (Cnidaria: Hydrozoa) using mitochondrial genome data and insight into their mitochondria ⚑ PMID 26618080	PeerJ	2015	68	L1 68/100 ⚑
The Genomic Aftermath of Hybridization in the Opportunistic Pathogen Candida metapsilosis. PMID 26517373	PLoS Genet	2015	56	56/100
Transcriptome analysis provides insights into the regulatory function of alternative splicing in antiviral immunity in grass carp (Ctenopharyngodon idella). ⚑ PMID 26248502	Sci Rep	2015	70	L1 70/100 ⚑
Discovery and characterization of Alu repeat sequences via precise local read assembly. PMID 26503250	Nucleic Acids Res	2015	69	L1 69/100
Genomic Correlates of Virulence Attenuation in the Deadly Amphibian Chytrid Fungus, Batrachochytrium dendrobatidis. ⚑ PMID 26333840	G3 (Bethesda)	2015	58	58/100 ⚑
Transcriptome assembly, profiling and differential gene expression analysis of the halophyte Suaeda fruticosa provides insights into salt tolerance. PMID 25943316	BMC Genomics	2015	73	73/100
A method for selectively enriching microbial DNA from contaminating vertebrate host DNA. PMID 24204593	PLoS One	2013	71	71/100
Mutations in CHD7, encoding a chromatin-remodeling protein, cause idiopathic hypogonadotropic hypogonadism and Kallmann syndrome. PMID 18834967	—	2008	70	L1 70/100
AlphaPIX and betaPIX and their role in focal adhesion formation. PMID 16337026	—	2006	—	L1 No computation
AlphaPIX associates with calpain 4, the small subunit of calpain, and has a dual role in integrin-mediated cell spreading. PMID 15611136	—	2005	—	L1 No computation
A transcriptomic atlas of Aedes aegypti reveals detailed functional organization of major body parts and gut regional specializations in sugar-fed and bl PMID 35471187	Elife	2022	73	L1 73/100
SnakeMAGs: a simple, efficient, flexible and scalable workflow to reconstruct prokaryotic genomes from metagenomes. PMID 36875992	F1000Res	2022	67	L1 67/100
GAVISUNK: genome assembly validation via inter-SUNK distances in Oxford Nanopore reads. PMID 36321867	Bioinformatics	2023	67	L1 67/100
Time course profiling of host cell response to herpesvirus infection using nanopore and synthetic long-read transcriptome sequencing. PMID 34244540	Sci Rep	2021	50	L1 50/100