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498 matching publication(s)
RNA-sequence analysis of primary alveolar macrophages after in vitro infection with porcine reproductive and respiratory syndrome virus strains of differing vir⚑
PMID 24643046 · PLoS One · 2014
41/100
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A consensus approach to vertebrate de novo transcriptome assembly from RNA-seq data: assembly of the duck (Anas platyrhynchos) transcriptome.
PMID 25009556 · Front Genet · 2014
67/100
WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization.
PMID 25254103 · F1000Res · 2014
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76/100
OptiType: precision HLA typing from next-generation sequencing data.
PMID 25143287 · Bioinformatics · 2014
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95/100
A comparative study of techniques for differential expression analysis on RNA-Seq data.
PMID 25119138 · PLoS One · 2014
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58/100
High-resolution mapping of transcriptional dynamics across tissue development reveals a stable mRNA-tRNA interface.
PMID 25122613 · Genome Res · 2014
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87/100
Nucleosome regulatory dynamics in response to TGFβ.
PMID 24771338 · Nucleic Acids Res · 2014
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59/100
Enriched domain detector: a program for detection of wide genomic enrichment domains robust against local variations.
PMID 24782521 · Nucleic Acids Res · 2014
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79/100
LaSSO, a strategy for genome-wide mapping of intronic lariats and branch points using RNA-seq.
PMID 24709818 · Genome Res · 2014
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68/100
HTSstation: a web application and open-access libraries for high-throughput sequencing data analysis.
PMID 24475057 · PLoS One · 2014
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66/100
Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de bruijn graphs.⚑
PMID 23536903 · PLoS One · 2013
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45/100
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Does excitatory fronto-extracerebral tDCS lead to improved working memory performance?
PMID 24555105 · F1000Res · 2013
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61/100
StatsDB: platform-agnostic storage and understanding of next generation sequencing run metrics.⚑
PMID 24627795 · F1000Res · 2013
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43/100
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Cyrface: An interface from Cytoscape to R that provides a user interface to R packages.
PMID 24715956 · F1000Res · 2013
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67/100
Genomic and transcriptomic plasticity in treatment-naive ovarian cancer.
PMID 24221193 · Genome Res · 2013
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30/100
The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution.
PMID 24068976 · PLoS Genet · 2013
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76/100
Genome-wide signatures of convergent evolution in echolocating mammals.
PMID 24005325 · Nature · 2013
not yet assessed
Combining evidence of preferential gene-tissue relationships from multiple sources.
PMID 23950964 · PLoS One · 2013
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53/100
An extensive evaluation of read trimming effects on Illumina NGS data analysis.
PMID 24376861 · PLoS One · 2013
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85/100
Hyb: a bioinformatics pipeline for the analysis of CLASH (crosslinking, ligation and sequencing of hybrids) data.
PMID 24211736 · Methods · 2013
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71/100
Transcriptome profiling of Giardia intestinalis using strand-specific RNA-seq.
PMID 23555231 · PLoS Comput Biol · 2013
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74/100
Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA.
PMID 22466171 · Genome Res · 2012
L1
80/100
Genomic analysis of bacteria in the Acute Oak Decline pathobiome.
PMID 30625111 · Microb Genom · 2019
L1
100/100
A platinum standard pan-genome resource that represents the population structure of Asian rice.
PMID 32265447 · Sci Data · 2020
L1
99/100
Diminutive, degraded but dissimilar: Wolbachia genomes from filarial nematodes do not conform to a single paradigm.
PMID 33295865 · Microb Genom · 2020
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98/100
Metatranscriptomics From a Small Aquatic System: Microeukaryotic Community Functions Through the Diurnal Cycle.
PMID 32523568 · Front Microbiol · 2020
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97/100
Taxonomic and functional partitioning of Chloroflexota populations under ferruginous conditions at and below the sediment-water interface.
PMID 39384533 · FEMS Microbiol Ecol · 2024
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85/100
Contrasting nutrient retention in alpine soils: the role of soil microbiome in phosphorus and nitrogen mobility in scree and meadow environments.
PMID 41632073 · FEMS Microbiol Ecol · 2026
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63/100
DNA Methylation Directs Polycomb-Dependent 3D Genome Re-organization in Naive Pluripotency.
PMID 31722211 · Cell Rep · 2019
50/100
Grad-seq identifies KhpB as a global RNA-binding protein in Clostridioides difficile that regulates toxin production.
PMID 37223250 · Microlife · 2021
50/100
Population genomics of the Wolbachia endosymbiont in Drosophila melanogaster.
PMID 23284297 · PLoS Genet · 2012
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93/100
TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells.
PMID 23233547 · Genome Res · 2012
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78/100
High-resolution transcriptome and genome-wide dynamics of RNA polymerase and NusA in Mycobacterium tuberculosis.
PMID 23222129 · Nucleic Acids Res · 2012
L1
69/100
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.
PMID 24304889 · Nucleic Acids Res · 2013
L1
84/100
The tumour suppressor L(3)mbt inhibits neuroepithelial proliferation and acts on insulator elements.
PMID 21857667 · Nat Cell Biol · 2011
L1
90/100
Extensive variation between chromosomes of North American and European hop.
PMID 42204144 · Nat Commun · 2026
L1
87/100
An integrated single-cell and spatial proteotranscriptomics atlas of fibroblast-driven immunoregulation within the human adult oral cavity.
PMID 42147490 · Cell Press Blue · 2026
85/100
Prognostic biomarker discovery in pancreatic cancer through hybrid ensemble feature selection and multi-omics data.
PMID 41957754 · BioData Min · 2026
L1
92/100
A comparative study on recombination activity in cattle.
PMID 41942849 · Genet Sel Evol · 2026
L1
93/100
A conserved glycan motif induces broadly reactive functional antibodies against the zoonotic pathogen Streptococcus suis.
PMID 41880495 · Sci Adv · 2026
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77/100
Endothelial Adgrl2 Expression and Alternative Splicing Controls the Cerebrovasculature.
PMID 41876233 · J Neurosci · 2026
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75/100
The mouse gastric surface epithelial cell and its response to early Helicobacter pylori infection.
PMID 41824631 · Virulence · 2026
L1
100/100
Prediction, syntax and semantic grounding in the brain and large language models.
PMID 41807493 · Sci Rep · 2026
L1
86/100
Endogenous retroviral elements LTR8B and MER65 rewire PSG9 regulation to control trophoblast syncytialization and pre-eclampsia risk.
PMID 41796334 · Genome Biol · 2026
L1
68/100
Intratumoral heterogeneity in microsatellite instability status at single-cell resolution.
PMID 41767255 · iScience · 2026
L1
100/100
ConNIS and labeling instability: New statistical methods for improving the detection of essential genes in TraDIS libraries.
PMID 41790830 · PLoS Comput Biol · 2026
L1
83/100