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37 matching publication(s)

Publication	Journal	Year	Score	Verdict
Ecotype diversity and conversion in Photobacterium profundum strains. PMID 24824441	PLoS One	2014	77	L1 77/100
A comparative study of techniques for differential expression analysis on RNA-Seq data. PMID 25119138	PLoS One	2014	58	L1 58/100
Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA. PMID 22466171	Genome Res	2012	80	L1 80/100
Extensive variation between chromosomes of North American and European hop. PMID 42204144	Nat Commun	2026	87	L1 87/100
Gli1-expressing stromal cells are highly reparative precursors of long-lived chondroprogenitors in the fetal murine limb. ⚑ PMID 41253754	Nat Commun	2025	10	L1 10/100 ⚑
GlASS - Global Aggregation of Stream Silica. PMID 41115898	Sci Data	2025	89	L1 89/100
NK2R control of energy expenditure and feeding to treat metabolic diseases. PMID 39537932	Nature	2024	87	L1 87/100
An atlas of the human liver diurnal transcriptome and its perturbation by hepatitis C virus infection. PMID 39209804	Nat Commun	2024	50	L1 50/100
Meta-analysis of six dairy cattle breeds reveals biologically relevant candidate genes for mastitis resistance. ⚑ PMID 39009986	Genet Sel Evol	2024	69	L1 69/100 ⚑
Refining breast cancer biomarker discovery and drug targeting through an advanced data-driven approach. PMID 38253993	BMC Bioinformatics	2024	59	59/100
Genetics of circulating inflammatory proteins identifies drivers of immune-mediated disease risk and therapeutic targets. PMID 37563310	Nat Immunol	2023	93	L1 93/100
Colocalization and potential interactions of Endozoicomonas and chlamydiae in microbial aggregates of the coral Pocillopora acuta&lt PMID 37196086	Sci Adv	2023	85	L1 85/100
Discovery of a novel filamentous prophage in the genome of the Mimosa pudica microsymbiont Cupriavidus taiwanensis STM 6018. ⚑ PMID 36925474	Front Microbiol	2023	74	L1 74/100 ⚑
Identification of genes influencing the evolution of Escherichia coli ST372 in dogs and humans. PMID 36752777	Microb Genom	2023	89	L1 89/100
Integrating transcriptomic datasets across neurological disease identifies unique myeloid subpopulations driving disease-specific signatures. ⚑ PMID 36527260	Glia	2022	26	L1 26/100 ⚑
BaRTv2: a highly resolved barley reference transcriptome for accurate transcript-specific RNA-seq quantification. PMID 35704392	Plant J	2022	94	L1 94/100
A bioinformatic pipeline for simulating viral integration data. PMID 35496474	Data Brief	2022	96	96/100
Long-Read RNA Sequencing Identifies Polyadenylation Elongation and Differential Transcript Usage of Host Transcripts During SARS-CoV-2 In Vitro Infection PMID 35464437	Front Immunol	2022	90	L1 90/100
Mucospheres produced by a mixotrophic protist impact ocean carbon cycling. PMID 35288549	Nat Commun	2022	58	L2 58/100
epiGBS2: Improvements and evaluation of highly multiplexed, epiGBS-based reduced representation bisulfite sequencing. ⚑ PMID 35178872	Mol Ecol Resour	2022	52	52/100 ⚑
A role for ColV plasmids in the evolution of pathogenic Escherichia coli ST58. PMID 35115531	Nat Commun	2022	95	L1 95/100
ddRAD-seq reveals the genetic structure and detects signals of selection in Italian brown trout. PMID 35100964	Genet Sel Evol	2022	87	L1 87/100
An accurate method for identifying recent recombinants from unaligned sequences. PMID 35025988	Bioinformatics	2022	84	L1 84/100
Genome scans of facial features in East Africans and cross-population comparisons reveal novel associations. PMID 34411106	PLoS Genet	2021	—	L1 No data access
MicroPIPE: validating an end-to-end workflow for high-quality complete bacterial genome construction. PMID 34172000	BMC Genomics	2021	74	L1 74/100
Systematic benchmarking of tools for CpG methylation detection from nanopore sequencing. PMID 34103501	Nat Commun	2021	99	L1 99/100
Identification of Proteins Deregulated by Platinum-Based Chemotherapy as Novel Biomarkers and Therapeutic Targets in Non-Small Cell Lung Cancer. PMID 33777753	Front Oncol	2021	81	81/100
The oncogene AAMDC links PI3K-AKT-mTOR signaling with metabolic reprograming in estrogen receptor-positive breast cancer. PMID 33772001	Nat Commun	2021	85	L1 85/100
MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets. PMID 32256520	Front Genet	2020	50	L1 50/100
Stem rust resistance in wheat is suppressed by a subunit of the mediator complex. PMID 32111840	Nat Commun	2020	95	L1 95/100
Transcriptomic profiling of skeletal muscle adaptations to exercise and inactivity. PMID 31980607	Nat Commun	2020	52	L1 52/100
Improved precision of epigenetic clock estimates across tissues and its implication for biological ageing. PMID 31443728	Genome Med	2019	68	L1 68/100
Trans-ethnic association study of blood pressure determinants in over 750,000 individuals. PMID 30578418	Nat Genet	2018	—	L1 No data access
Analysis of the genome of the New Zealand giant collembolan (Holacanthella duospinosa) sheds light on hexapod evolution. PMID 29041914	BMC Genomics	2017	72	L1 72/100
Evidence for L1-associated DNA rearrangements and negligible L1 retrotransposition in glioblastoma multiforme. PMID 27843499	Mob DNA	2016	67	67/100
Conservation and losses of non-coding RNAs in avian genomes. PMID 25822729	PLoS One	2015	100	L1 100/100
Long-read nanopore shotgun metagenomic DNA sequencing for river biodiversity, wildlife, pollution, and environmental health monitoring. PMID 42038409	NAR Genom Bioinform	2026	78	L1 78/100