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WikiPathways App for Cytoscape: Making biological pathways amenable to network analysis and visualization.
PMID 25254103 · F1000Res · 2014
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76/100
OptiType: precision HLA typing from next-generation sequencing data.
PMID 25143287 · Bioinformatics · 2014
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95/100
High-resolution mapping of transcriptional dynamics across tissue development reveals a stable mRNA-tRNA interface.
PMID 25122613 · Genome Res · 2014
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87/100
Enriched domain detector: a program for detection of wide genomic enrichment domains robust against local variations.
PMID 24782521 · Nucleic Acids Res · 2014
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79/100
The genome and development-dependent transcriptomes of Pyronema confluens: a window into fungal evolution.
PMID 24068976 · PLoS Genet · 2013
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76/100
An extensive evaluation of read trimming effects on Illumina NGS data analysis.
PMID 24376861 · PLoS One · 2013
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85/100
Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA.
PMID 22466171 · Genome Res · 2012
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80/100
Genomic analysis of bacteria in the Acute Oak Decline pathobiome.
PMID 30625111 · Microb Genom · 2019
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100/100
A platinum standard pan-genome resource that represents the population structure of Asian rice.
PMID 32265447 · Sci Data · 2020
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99/100
Diminutive, degraded but dissimilar: Wolbachia genomes from filarial nematodes do not conform to a single paradigm.
PMID 33295865 · Microb Genom · 2020
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98/100
Metatranscriptomics From a Small Aquatic System: Microeukaryotic Community Functions Through the Diurnal Cycle.
PMID 32523568 · Front Microbiol · 2020
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97/100
Taxonomic and functional partitioning of Chloroflexota populations under ferruginous conditions at and below the sediment-water interface.
PMID 39384533 · FEMS Microbiol Ecol · 2024
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85/100
Population genomics of the Wolbachia endosymbiont in Drosophila melanogaster.
PMID 23284297 · PLoS Genet · 2012
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93/100
TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells.
PMID 23233547 · Genome Res · 2012
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78/100
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.
PMID 24304889 · Nucleic Acids Res · 2013
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84/100
The tumour suppressor L(3)mbt inhibits neuroepithelial proliferation and acts on insulator elements.
PMID 21857667 · Nat Cell Biol · 2011
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90/100
Extensive variation between chromosomes of North American and European hop.
PMID 42204144 · Nat Commun · 2026
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87/100
An integrated single-cell and spatial proteotranscriptomics atlas of fibroblast-driven immunoregulation within the human adult oral cavity.
PMID 42147490 · Cell Press Blue · 2026
85/100
Prognostic biomarker discovery in pancreatic cancer through hybrid ensemble feature selection and multi-omics data.
PMID 41957754 · BioData Min · 2026
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92/100
A comparative study on recombination activity in cattle.
PMID 41942849 · Genet Sel Evol · 2026
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93/100
A conserved glycan motif induces broadly reactive functional antibodies against the zoonotic pathogen Streptococcus suis.
PMID 41880495 · Sci Adv · 2026
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77/100
Endothelial Adgrl2 Expression and Alternative Splicing Controls the Cerebrovasculature.
PMID 41876233 · J Neurosci · 2026
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75/100
The mouse gastric surface epithelial cell and its response to early Helicobacter pylori infection.
PMID 41824631 · Virulence · 2026
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100/100
Prediction, syntax and semantic grounding in the brain and large language models.
PMID 41807493 · Sci Rep · 2026
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86/100
Intratumoral heterogeneity in microsatellite instability status at single-cell resolution.
PMID 41767255 · iScience · 2026
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100/100
ConNIS and labeling instability: New statistical methods for improving the detection of essential genes in TraDIS libraries.
PMID 41790830 · PLoS Comput Biol · 2026
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83/100
Exploring Gene Expression Patterns in Alzheimer's Disease Using a Human Microarray Data Meta-Analysis.
PMID 41744654 · Biology (Basel) · 2026
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100/100
Single-cell protein activity analysis reveals aberrant myogenesis and IGF2-PI3K pathway dependencies in MYOD1-mutant rhabdomyosarcoma.
PMID 41758938 · Sci Adv · 2026
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84/100
The first single-stranded DNA virus targeting Pectobacterium belongs to the family Microviridae and demonstrates a broad host range to Pectobacterium brasiliens
PMID 41739249 · Arch Virol · 2026
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MCPmed: a call for Model Context Protocol-enabled bioinformatics web services for LLM-driven discovery.⚑
PMID 41729821 · Brief Bioinform · 2026
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80/100
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Comparative Genome Analysis of 16SrXII-A 'Candidatus Phytoplasma solani' POT Transmitted by Hyalesthes obsoletus.
PMID 41597744 · Microorganisms · 2026
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95/100
Distinct sympathetic projections to brown fat regulate thermogenesis and glucose tolerance.
PMID 41559445 · Nat Metab · 2026
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85/100
The cotranslational cycle of the ribosome-bound Hsp70 homolog Ssb.
PMID 41545346 · Nat Commun · 2026
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85/100
Accurate chromatin marks peak calling with Omnipeak.
PMID 41521664 · Nucleic Acids Res · 2026
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77/100
Enhanced microRNA accumulation and gene silencing efficiency through optimized precursor base pairing.
PMID 41505763 · Plant J · 2026
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87/100
Integrative Transcriptomic and Evolutionary Analysis of Drought and Heat Stress Responses in Solanum tuberosum and Solanum lycopersi
PMID 41470732 · Plants (Basel) · 2025
84/100
Histone deacetylase SIRT6 regulates tryptophan catabolism and prevents metabolite imbalance associated with neurodegeneration.
PMID 41345108 · Nat Commun · 2025
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93/100
Public Omics Explorer (POE): Enabling integrative semantic search across GEO omics datasets based on PubMed publications.
PMID 41282419 · Comput Struct Biotechnol J · 2025
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83/100
Network Controllability Reveals Key Mitigation Points for Tumor-Promoting Signaling in Tumor-Educated Platelets.
PMID 41226816 · Int J Mol Sci · 2025
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84/100
Allele-specific immune gene quantification and expression analysis in single-cell RNA-seq data.
PMID 41229397 · NAR Genom Bioinform · 2025
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75/100
Recombination events restored the functional horned haplotypes in the offspring of polled parents.
PMID 41174470 · Genet Sel Evol · 2025
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98/100
Hepatocyte dedifferentiation in 2D culture reveals extensive transcriptomic and proteomic rewiring.
PMID 41111196 · Hepatol Commun · 2025
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77/100
Under the Shadow: Old-biased Genes Are Subject to Weak Purifying Selection at Both the Tissue- and Cell Type-Specific Levels.
PMID 41092135 · Genome Biol Evol · 2025
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93/100
Age Deceleration and Reversal Gene Patterns in Dauer Diapause.
PMID 41104926 · Aging Cell · 2025
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88/100
Genomics Define Malignant Transformation in Myeloma Precursor Conditions.
PMID 41061199 · J Clin Oncol · 2025
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78/100
Identification of a PRDM1-regulated T cell network to regulate atherosclerotic plaque inflammation.
PMID 41039608 · Genome Med · 2025
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100/100
Single-nucleus mRNA-sequencing reveals dynamics of lipogenic and thermogenic adipocyte populations in murine brown adipose tissue in response to cold exposure.
PMID 40945691 · Mol Metab · 2025
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93/100