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544 matching publication(s)

Publication	Journal	Year	Score	Verdict
Predicting position along a looping immune response trajectory. PMID 30296270	PLoS One	2018	98	L1 98/100
Firefly genomes illuminate parallel origins of bioluminescence in beetles. PMID 30324905	Elife	2018	93	L1 93/100
A methyl-sensitive element induces bidirectional transcription in TATA-less CpG island-associated promoters. PMID 30332484	PLoS One	2018	63	L1 63/100
Genomic Description of 'Candidatus Abyssubacteria,' a Novel Subsurface Lineage Within the Candidate Phylum Hydrogenedentes. PMID 30210471	Front Microbiol	2018	91	L1 91/100
miRge 2.0 for comprehensive analysis of microRNA sequencing data. PMID 30153801	BMC Bioinformatics	2018	89	L1 89/100
Metabolite-Centric Reporter Pathway and Tripartite Network Analysis of Arabidopsis Under Cold Stress. PMID 30258841	Front Bioeng Biotechnol	2018	83	L1 83/100
Comparative analysis of circular RNAs between soybean cytoplasmic male-sterile line NJCMS1A and its maintainer NJCMS1B by high-throughput sequencing. PMID 30208848	BMC Genomics	2018	50	50/100
Cancer-predicting transcriptomic and epigenetic signatures revealed for ulcerative colitis in patient-derived epithelial organoids. PMID 29983891	Oncotarget	2018	65	L1 65/100
Verrucomicrobia are prevalent in north-temperate freshwater lakes and display class-level preferences between lake habitats. PMID 29590198	PLoS One	2018	99	L1 99/100
Single-cell transcriptional dynamics of flavivirus infection. PMID 29451494	Elife	2018	90	L1 90/100
Invasive bacterial disease trends and characterization of group B streptococcal isolates among young infants in southern Mozambique, 2001-2015. PMID 29351318	PLoS One	2018	97	L1 97/100
Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data. PMID 29420797	Nucleic Acids Res	2018	68	L1 68/100
Numb prevents a complete epithelial-mesenchymal transition by modulating Notch signalling. PMID 29187638	J R Soc Interface	2017	49	L1 49/100
Genome-wide prediction of DNase I hypersensitivity using gene expression. PMID 29051481	Nat Commun	2017	79	L1 79/100
Viewing RNA-seq data on the entire human genome. PMID 28979763	F1000Res	2017	50	L1 50/100
Wide-Open: Accelerating public data release by automating detection of overdue datasets. PMID 28594819	PLoS Biol	2017	74	L1 74/100
Activity of distinct growth factor receptor network components in breast tumors uncovers two biologically relevant subtypes. PMID 28446242	Genome Med	2017	92	L1 92/100
Distributed biotin-streptavidin transcription roadblocks for mapping cotranscriptional RNA folding. PMID 28398514	Nucleic Acids Res	2017	77	L1 77/100
Determining virus-host interactions and glycerol metabolism profiles in geographically diverse solar salterns with metagenomics. PMID 28097058	PeerJ	2017	95	L1 95/100
Metavisitor, a Suite of Galaxy Tools for Simple and Rapid Detection and Discovery of Viruses in Deep Sequence Data. PMID 28045932	PLoS One	2017	78	L1 78/100
Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations a PMID 27832824	Genome Biol	2016	84	L1 84/100
Identification and Characterization of Small Noncoding RNAs in Genome Sequences of the Edible Fungus Pleurotus ostreatus. PMID 27703969	Biomed Res Int	2016	95	L1 95/100
A robust data scaling algorithm to improve classification accuracies in biomedical data. PMID 27612635	BMC Bioinformatics	2016	87	87/100
Exposure to the widely used herbicide atrazine results in deregulation of global tissue-specific RNA transcription in the third generation and is associated wit ⚑ PMID 27655631	Nucleic Acids Res	2016	10	L1 10/100 ⚑
An open RNA-Seq data analysis pipeline tutorial with an example of reprocessing data from a recent Zika virus study. PMID 27583132	F1000Res	2016	74	L1 74/100
Spatial organization shapes the turnover of a bacterial transcriptome. PMID 27198188	Elife	2016	71	L1 71/100
Phenotypic and Genotypic Characteristics of Shiga Toxin-Producing Escherichia coli Isolated from Surface Waters and Sediments in a Canadian Urban-Agricultural L PMID 27092297	Front Cell Infect Microbiol	2016	89	L1 89/100
AuPairWise: A Method to Estimate RNA-Seq Replicability through Co-expression. PMID 27082953	PLoS Comput Biol	2016	88	L1 88/100
Integrative analyses reveal signaling pathways underlying familial breast cancer susceptibility. PMID 26969729	Mol Syst Biol	2016	67	L1 67/100
CoINcIDE: A framework for discovery of patient subtypes across multiple datasets. PMID 26961683	Genome Med	2016	87	L1 87/100
HGA: de novo genome assembly method for bacterial genomes using high coverage short sequencing reads. ⚑ PMID 26945881	BMC Genomics	2016	58	58/100 ⚑
Gene-expression patterns in peripheral blood classify familial breast cancer susceptibility. PMID 26538066	BMC Med Genomics	2015	83	L1 83/100
Phylogenetic analysis of higher-level relationships within Hydroidolina (Cnidaria: Hydrozoa) using mitochondrial genome data and insight into their mitochondria ⚑ PMID 26618080	PeerJ	2015	68	L1 68/100 ⚑
Discovery and characterization of Alu repeat sequences via precise local read assembly. PMID 26503250	Nucleic Acids Res	2015	69	L1 69/100
Cell Specific eQTL Analysis without Sorting Cells. PMID 25955312	PLoS Genet	2015	90	L1 90/100
Transcriptome assembly, profiling and differential gene expression analysis of the halophyte Suaeda fruticosa provides insights into salt tolerance. PMID 25943316	BMC Genomics	2015	73	73/100
Ribosome A and P sites revealed by length analysis of ribosome profiling data. PMID 25805170	Nucleic Acids Res	2015	81	L1 81/100
A method for selectively enriching microbial DNA from contaminating vertebrate host DNA. PMID 24204593	PLoS One	2013	71	71/100
A transcriptomic atlas of Aedes aegypti reveals detailed functional organization of major body parts and gut regional specializations in sugar-fed and bl PMID 35471187	Elife	2022	73	L1 73/100
Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments. PMID 22064864	Nucleic Acids Res	2011	83	L1 83/100
GAVISUNK: genome assembly validation via inter-SUNK distances in Oxford Nanopore reads. PMID 36321867	Bioinformatics	2023	67	L1 67/100
Long-read nanopore shotgun metagenomic DNA sequencing for river biodiversity, wildlife, pollution, and environmental health monitoring. PMID 42038409	NAR Genom Bioinform	2026	78	L1 78/100
Time course profiling of host cell response to herpesvirus infection using nanopore and synthetic long-read transcriptome sequencing. PMID 34244540	Sci Rep	2021	50	L1 50/100
Predicting favorable landing pads for targeted integrations in Chinese hamster ovary cell lines by learning stability characteristics from random transgene inte PMID 33304461	Comput Struct Biotechnol J	2020	—	not yet assessed