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32 matching publication(s)

Publication	Journal	Year	Score	Verdict
A platinum standard pan-genome resource that represents the population structure of Asian rice. PMID 32265447	Sci Data	2020	99	L1 99/100
A blood-based DNA damage signature in patients with Parkinson's disease is associated with disease progression. PMID 40913219	Nat Aging	2025	69	L1 69/100
COVID-19 vaccination atlas using an integrative systems vaccinology approach. PMID 40456760	NPJ Vaccines	2025	69	L1 69/100
MACanalyzeR scRNAseq analysis tool reveals PPARγHIGH/GDF15HIGH lipid-associated macrophages facilitate thermogenic ⚑ PMID 40450001	Nat Commun	2025	70	L1 70/100 ⚑
Comprehensive benchmarking of large language models for RNA secondary structure prediction. PMID 40205851	Brief Bioinform	2025	88	L1 88/100
What defines a photosynthetic microbial mat in western Antarctica? PMID 40043057	PLoS One	2025	85	L1 85/100
Community assessment of methods to deconvolve cellular composition from bulk gene expression. PMID 39191725	Nat Commun	2024	63	L1 63/100
Cross-species comparative hippocampal transcriptomics in Alzheimer's disease. PMID 38292167	iScience	2023	75	L1 75/100
Chromosome-level genome assembly of Lilford's wall lizard, Podarcis lilfordi (Günther, 1874) from the Balearic Islands (Spain). PMID 37137526	DNA Res	2023	85	85/100
Multiomic analysis of malignant pleural mesothelioma identifies molecular axes and specialized tumor profiles driving intertumor heterogeneity. PMID 36928603	Nat Genet	2023	80	L1 80/100
annotate_my_genomes: an easy-to-use pipeline to improve genome annotation and uncover neglected genes by hybrid RNA sequencing. PMID 36472574	Gigascience	2022	78	L1 78/100
Modulation of HERV Expression by Four Different Encephalitic Arboviruses during Infection of Human Primary Astrocytes. ⚑ PMID 36423114	Viruses	2022	56	L1 56/100 ⚑
Comparative Genomics of Listeria monocytogenes Isolates from Ruminant Listeriosis Cases in the Midwest United States. PMID 36314928	Microbiol Spectr	2022	91	L1 91/100
Analysis of Tumor-Infiltrating T-Cell Transcriptomes Reveal a Unique Genetic Signature across Different Types of Cancer. PMID 36232369	Int J Mol Sci	2022	87	87/100
AI-assisted discovery of an ethnicity-influenced driver of cell transformation in esophageal and gastroesophageal junction adenocarcinomas. PMID 36134663	JCI Insight	2022	84	L1 84/100
MEDUSA: A Pipeline for Sensitive Taxonomic Classification and Flexible Functional Annotation of Metagenomic Shotgun Sequences. PMID 35330728	Front Genet	2022	50	L1 50/100
Severe COVID-19 Shares a Common Neutrophil Activation Signature with Other Acute Inflammatory States. PMID 35269470	Cells	2022	88	L2 88/100
Stage-stratified molecular profiling of non-muscle-invasive bladder cancer enhances biological, clinical, and therapeutic insight. PMID 35028613	Cell Rep Med	2021	75	L1 75/100
Assessing Bos taurus introgression in the UOA Bos indicus assembly. PMID 34922445	Genet Sel Evol	2021	86	L1 86/100
Gene Expression Analysis Platform (GEAP): A highly customizable, fast, versatile and ready-to-use microarray analysis platform. PMID 34927664	Genet Mol Biol	2021	83	L1 83/100
RNA modifications detection by comparative Nanopore direct RNA sequencing. PMID 34893601	Nat Commun	2021	50	L1 50/100
Candidates for Balancing Selection in Leishmania donovani Complex Parasites. PMID 34865011	Genome Biol Evol	2021	64	L1 64/100
Target identification for repurposed drugs active against SARS-CoV-2 via high-throughput inverse docking. PMID 34825285	J Comput Aided Mol Des	2021	63	L1 63/100
A whole genome duplication drives the genome evolution of Phytophthora betacei, a closely related species to Phytophthora infestans. PMID 34740326	BMC Genomics	2021	95	L1 95/100
Reverse Engineering of the Pediatric Sepsis Regulatory Network and Identification of Master Regulators. PMID 34680414	Biomedicines	2021	67	67/100
Chromosome-scale genome sequencing, assembly and annotation of six genomes from subfamily Leishmaniinae. PMID 34489462	Sci Data	2021	92	92/100
Chromosome-Scale Assembly of the Complete Genome Sequence of Leishmania (Mundinia) enriettii, Isolate CUR178, Strain LV763. ⚑ PMID 34498918	Microbiol Resour Announc	2021	80	L1 80/100 ⚑
Accelerated Evolution of Tissue-Specific Genes Mediates Divergence Amidst Gene Flow in European Green Lizards. ⚑ PMID 33988711	Genome Biol Evol	2021	23	L1 23/100 ⚑
A comparative gene co-expression analysis using self-organizing maps on two congener filmy ferns identifies specific desiccation tolerance mechanisms associated ⚑ PMID 32019526	BMC Plant Biol	2020	62	L1 62/100 ⚑
PDGFRA defines the mesenchymal stem cell Kaposi's sarcoma progenitors by enabling KSHV oncogenesis in an angiogenic environment. PMID 31881074	PLoS Pathog	2019	85	L1 85/100
Transcriptomic and functional analyses of the piRNA pathway in the Chagas disease vector Rhodnius prolixus. PMID 30303955	PLoS Negl Trop Dis	2018	94	L1 94/100
Firefly genomes illuminate parallel origins of bioluminescence in beetles. PMID 30324905	Elife	2018	93	L1 93/100