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26 matching publication(s)

Publication	Journal	Year	Score	Verdict
FusionQ: a novel approach for gene fusion detection and quantification from paired-end RNA-Seq. PMID 23768108	BMC Bioinformatics	2013	65	L1 65/100
Digital sorting of complex tissues for cell type-specific gene expression profiles. PMID 23497278	BMC Bioinformatics	2013	85	L1 85/100
Correcting scale distortion in RNA sequencing data. PMID 39875825	BMC Bioinformatics	2025	76	L1 76/100
SGCP: a spectral self-learning method for clustering genes in co-expression networks. ⚑ PMID 38956463	BMC Bioinformatics	2024	51	L1 51/100 ⚑
SurvConvMixer: robust and interpretable cancer survival prediction based on ConvMixer using pathway-level gene expression images. PMID 38539106	BMC Bioinformatics	2024	77	L1 77/100
Gbdmr: identifying differentially methylated CpG regions in the human genome via generalized beta regressions. ⚑ PMID 38443825	BMC Bioinformatics	2024	62	L1 62/100 ⚑
Refining breast cancer biomarker discovery and drug targeting through an advanced data-driven approach. PMID 38253993	BMC Bioinformatics	2024	59	59/100
Hierarchical classification-based pan-cancer methylation analysis to classify primary cancer. PMID 38066424	BMC Bioinformatics	2023	83	L1 83/100
transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation. PMID 37016291	BMC Bioinformatics	2023	95	L1 95/100
nf-core/circrna: a portable workflow for the quantification, miRNA target prediction and differential expression analysis of circular RNAs. PMID 36694127	BMC Bioinformatics	2023	76	L1 76/100
Evaluation of taxonomic classification and profiling methods for long-read shotgun metagenomic sequencing datasets. PMID 36513983	BMC Bioinformatics	2022	99	L1 99/100
msPIPE: a pipeline for the analysis and visualization of whole-genome bisulfite sequencing data. PMID 36123620	BMC Bioinformatics	2022	100	L1 100/100
getSequenceInfo: a suite of tools allowing to get genome sequence information from public repositories. PMID 35804320	BMC Bioinformatics	2022	99	L1 99/100
GEMmaker: process massive RNA-seq datasets on heterogeneous computational infrastructure. PMID 35501696	BMC Bioinformatics	2022	67	L1 67/100
SEAseq: a portable and cloud-based chromatin occupancy analysis suite. PMID 35193506	BMC Bioinformatics	2022	94	L1 94/100
RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis. PMID 34082707	BMC Bioinformatics	2021	85	L1 85/100
SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses. PMID 33932985	BMC Bioinformatics	2021	65	L1 65/100
lncEvo: automated identification and conservation study of long noncoding RNAs. PMID 33563213	BMC Bioinformatics	2021	61	L1 61/100
IsomiR_Window: a system for analyzing small-RNA-seq data in an integrative and user-friendly manner. PMID 33522913	BMC Bioinformatics	2021	78	L1 78/100
Automatic discovery of 100-miRNA signature for cancer classification using ensemble feature selection. PMID 31533612	BMC Bioinformatics	2019	69	L1 69/100
pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS). PMID 31035919	BMC Bioinformatics	2019	88	L1 88/100
Predicting enhancers in mammalian genomes using supervised hidden Markov models. PMID 30917778	BMC Bioinformatics	2019	70	L1 70/100
First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_. ⚑ PMID 30691411	BMC Bioinformatics	2019	30	L1 30/100 ⚑
miRge 2.0 for comprehensive analysis of microRNA sequencing data. PMID 30153801	BMC Bioinformatics	2018	89	L1 89/100
Roar: detecting alternative polyadenylation with standard mRNA sequencing libraries. PMID 27756200	BMC Bioinformatics	2016	75	75/100
A robust data scaling algorithm to improve classification accuracies in biomedical data. PMID 27612635	BMC Bioinformatics	2016	87	87/100