Explore
← New search
44 matching publication(s)
TEMP: a computational method for analyzing transposable element polymorphism in populations.
PMID 24753423 · Nucleic Acids Res · 2014
L1
61/100
Nucleosome regulatory dynamics in response to TGFβ.
PMID 24771338 · Nucleic Acids Res · 2014
L1
59/100
Enriched domain detector: a program for detection of wide genomic enrichment domains robust against local variations.
PMID 24782521 · Nucleic Acids Res · 2014
L1
79/100
Vespucci: a system for building annotated databases of nascent transcripts.
PMID 24304890 · Nucleic Acids Res · 2013
L1
73/100
High-resolution transcriptome and genome-wide dynamics of RNA polymerase and NusA in Mycobacterium tuberculosis.
PMID 23222129 · Nucleic Acids Res · 2012
L1
69/100
RNASEQR--a streamlined and accurate RNA-seq sequence analysis program.
PMID 22199257 · Nucleic Acids Res · 2011
L1
86/100
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments.
PMID 24304889 · Nucleic Acids Res · 2013
L1
84/100
Hobbes: optimized gram-based methods for efficient read alignment.
PMID 22199254 · Nucleic Acids Res · 2011
L1
83/100
Accurate chromatin marks peak calling with Omnipeak.
PMID 41521664 · Nucleic Acids Res · 2026
L1
77/100
A network-based model of Aspergillus fumigatus elucidates regulators of development and defensive natural products of an opportunistic pathogen.
PMID 41505094 · Nucleic Acids Res · 2026
L1
78/100
ASTRA: a comprehensive resource of stress-induced transcriptional activity in human cell lines.⚑
PMID 41263110 · Nucleic Acids Res · 2026
L1
73/100
⚑
Identifying human pre-mRNA cleavage and polyadenylation factors by genome-wide CRISPR screens using a dual fluorescence readthrough reporter.
PMID 38587191 · Nucleic Acids Res · 2024
L1
68/100
spotter: a single-nucleotide resolution stochastic simulation model of supercoiling-mediated transcription and translation in prokaryotes.
PMID 37602419 · Nucleic Acids Res · 2023
L1
77/100
A computationally-enhanced hiCLIP atlas reveals Staufen1-RNA binding features and links 3' UTR structure to RNA metabolism.
PMID 37013995 · Nucleic Acids Res · 2023
L1
72/100
MirDIP 5.2: tissue context annotation and novel microRNA curation.
PMID 36453996 · Nucleic Acids Res · 2023
L1
89/100
Mod(mdg4) variants repress telomeric retrotransposon HeT-A by blocking subtelomeric enhancers.
PMID 36373634 · Nucleic Acids Res · 2022
L1
68/100
COXPRESdb v8: an animal gene coexpression database navigating from a global view to detailed investigations.
PMID 36350658 · Nucleic Acids Res · 2023
L1
84/100
sgcocaller and comapr: personalised haplotype assembly and comparative crossover map analysis using single-gamete sequencing data.
PMID 36107768 · Nucleic Acids Res · 2022
L1
77/100
Cotranscriptional RNA strand exchange underlies the gene regulation mechanism in a purine-sensing transcriptional riboswitch.
PMID 35348734 · Nucleic Acids Res · 2022
L1
91/100
Foster thy young: enhanced prediction of orphan genes in assembled genomes.
PMID 34928390 · Nucleic Acids Res · 2022
L1
84/100
An archaeal histone-like protein regulates gene expression in response to salt stress.
PMID 34883507 · Nucleic Acids Res · 2021
L1
94/100
Phosphorylation of ribosomal protein S6 differentially affects mRNA translation based on ORF length.
PMID 34871442 · Nucleic Acids Res · 2021
L1
58/100
Analysis of subcellular transcriptomes by RNA proximity labeling with Halo-seq.
PMID 34875090 · Nucleic Acids Res · 2022
L1
56/100
metaGEM: reconstruction of genome scale metabolic models directly from metagenomes.
PMID 34614189 · Nucleic Acids Res · 2021
64/100
Frequency and patterns of ribonucleotide incorporation around autonomously replicating sequences in yeast reveal the division of labor of replicative DNA polyme
PMID 34551434 · Nucleic Acids Res · 2021
L1
75/100
TRAPID 2.0: a web application for taxonomic and functional analysis of de novo transcriptomes.
PMID 34197621 · Nucleic Acids Res · 2021
L1
60/100
eVITTA: a web-based visualization and inference toolbox for transcriptome analysis.
PMID 34019643 · Nucleic Acids Res · 2021
L1
82/100
The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols.
PMID 33978761 · Nucleic Acids Res · 2021
L1
No computation
Estimation of peptide elongation times from ribosome profiling spectra.
PMID 33885812 · Nucleic Acids Res · 2021
L1
76/100
4-Methylcytosine DNA modification is critical for global epigenetic regulation and virulence in the human pathogen Leptospira interrogans.
PMID 33301041 · Nucleic Acids Res · 2020
L1
78/100
miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems.
PMID 32374865 · Nucleic Acids Res · 2020
L1
61/100
Prediction of condition-specific regulatory genes using machine learning.
PMID 32329779 · Nucleic Acids Res · 2020
L1
85/100
mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations.
PMID 31799603 · Nucleic Acids Res · 2020
L1
89/100
sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression.
PMID 31114926 · Nucleic Acids Res · 2019
not yet assessed
Octopus-toolkit: a workflow to automate mining of public epigenomic and transcriptomic next-generation sequencing data.
PMID 29420797 · Nucleic Acids Res · 2018
L1
68/100
Distributed biotin-streptavidin transcription roadblocks for mapping cotranscriptional RNA folding.
PMID 28398514 · Nucleic Acids Res · 2017
L1
77/100
Bayesian prediction of RNA translation from ribosome profiling.⚑
PMID 28126919 · Nucleic Acids Res · 2017
62/100
⚑
Exposure to the widely used herbicide atrazine results in deregulation of global tissue-specific RNA transcription in the third generation and is associated wit⚑
PMID 27655631 · Nucleic Acids Res · 2016
L1
10/100
⚑
Discovery and characterization of Alu repeat sequences via precise local read assembly.
PMID 26503250 · Nucleic Acids Res · 2015
L1
69/100
Ribosome A and P sites revealed by length analysis of ribosome profiling data.
PMID 25805170 · Nucleic Acids Res · 2015
L1
81/100
Gene Expression Atlas update--a value-added database of microarray and sequencing-based functional genomics experiments.
PMID 22064864 · Nucleic Acids Res · 2011
L1
83/100