Explore
← New search
56 matching publication(s)
LoRA-TV: read depth profile-based clustering of tumor cells in single-cell sequencing.
PMID 38877886 · Brief Bioinform · 2024
L1
90/100
Prognostic biomarker discovery in pancreatic cancer through hybrid ensemble feature selection and multi-omics data.
PMID 41957754 · BioData Min · 2026
L1
92/100
Machine learning and free energy clustering reveal PAH protein binding linked to AD risk.
PMID 41953002 · iScience · 2026
L1
78/100
Prediction, syntax and semantic grounding in the brain and large language models.
PMID 41807493 · Sci Rep · 2026
L1
86/100
ConNIS and labeling instability: New statistical methods for improving the detection of essential genes in TraDIS libraries.
PMID 41790830 · PLoS Comput Biol · 2026
L1
83/100
MCPmed: a call for Model Context Protocol-enabled bioinformatics web services for LLM-driven discovery.⚑
PMID 41729821 · Brief Bioinform · 2026
L1
80/100
⚑
stDyer-image improves clustering analysis of spatially resolved transcriptomics and proteomics with morphological images.
PMID 41692960 · Bioinformatics · 2026
L1
75/100
Spatial information matters: are traditional imputation methods effective for spatial transcriptomics data?
PMID 41627342 · Brief Bioinform · 2026
L1
89/100
Smart spatial omics (S2-omics) optimizes region of interest selection to capture molecular heterogeneity in diverse tissues.
PMID 41298871 · Nat Cell Biol · 2025
L1
100/100
Public Omics Explorer (POE): Enabling integrative semantic search across GEO omics datasets based on PubMed publications.
PMID 41282419 · Comput Struct Biotechnol J · 2025
L1
83/100
The systematic assessment of completeness of public metadata accompanying omics studies in the Gene Expression Omnibus data repository.
PMID 40926267 · Genome Biol · 2025
L1
99/100
Enhanced Generalizability of RNA Secondary Structure Prediction via Convolutional Block Attention Network and Ensemble Learning.
PMID 40871599 · Molecules · 2025
L1
87/100
randPedPCA: rapid approximation of principal components from large pedigrees.
PMID 40877802 · Genet Sel Evol · 2025
L1
84/100
Chemist: A Domain-Specific Language by Chemists for Chemists.
PMID 40815845 · J Phys Chem A · 2025
89/100
Improving genomic prediction accuracy for methane emission and feed efficiency in sheep: integrating rumen microbial PCA with host genomic variation using neura
PMID 40676527 · Genet Sel Evol · 2025
L1
85/100
ChIP-seq Data Processing and Relative and Quantitative Signal Normalization for Saccharomyces cerevisiae.
PMID 40364978 · Bio Protoc · 2025
L1
100/100
Protocol for assessing regulatory elements in murine heart using an AAV9-based massively parallel reporter assay.
PMID 40252222 · STAR Protoc · 2025
L1
93/100
GeneSetCart: assembling, augmenting, combining, visualizing, and analyzing gene sets.⚑
PMID 40208796 · Gigascience · 2025
L1
76/100
⚑
scSAMAC: saliency-adjusted masking induced attention contrastive learning for single-cell clustering.
PMID 40131310 · Brief Bioinform · 2025
L1
85/100
Statistical framework for calling allelic imbalance in high-throughput sequencing data.
PMID 39966391 · Nat Commun · 2025
L1
89/100
Single-Cell Hi-C Technologies and Computational Data Analysis.
PMID 39887949 · Adv Sci (Weinh) · 2025
L1
80/100
Revealing the critical state and identifying individualized dynamic network biomarker for type 2 diabetes through advanced analysis methods on individual basis.
PMID 39890881 · Sci Rep · 2025
L1
75/100
Multiomic machine learning on lactylation for molecular typing and prognosis of lung adenocarcinoma.
PMID 39856156 · Sci Rep · 2025
L1
83/100
Correcting scale distortion in RNA sequencing data.
PMID 39875825 · BMC Bioinformatics · 2025
L1
76/100
Protocol for the generation of single-nuclei RNA-seq libraries and quantification of heterogeneous cell types activated during social interaction.
PMID 39423127 · STAR Protoc · 2024
L1
78/100
Analytical code sharing practices in biomedical research.
PMID 38983240 · PeerJ Comput Sci · 2024
L1
92/100
Forseti: a mechanistic and predictive model of the splicing status of scRNA-seq reads.
PMID 38940130 · Bioinformatics · 2024
L1
87/100
Detecting tipping points of complex diseases by network information entropy.
PMID 38960408 · Brief Bioinform · 2024
L1
78/100
PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testin
PMID 38860884 · Microb Genom · 2024
L1
75/100
SurvConvMixer: robust and interpretable cancer survival prediction based on ConvMixer using pathway-level gene expression images.
PMID 38539106 · BMC Bioinformatics · 2024
L1
77/100
ResnetAge: A Resnet-Based DNA Methylation Age Prediction Method.
PMID 38247911 · Bioengineering (Basel) · 2023
L1
75/100
Benefit of using interaction effects for the analysis of high-dimensional time-response or dose-response data for two-group comparisons.
PMID 38012163 · Sci Rep · 2023
L1
92/100
Interpretable prediction models for widespread m6A RNA modification across cell lines and tissues.
PMID 37995291 · Bioinformatics · 2023
L1
79/100
Graph Random Forest: A Graph Embedded Algorithm for Identifying Highly Connected Important Features.
PMID 37509188 · Biomolecules · 2023
L1
89/100
Analyzing biomarker discovery: Estimating the reproducibility of biomarker sets.
PMID 35901020 · PLoS One · 2022
L1
83/100
SEAseq: a portable and cloud-based chromatin occupancy analysis suite.
PMID 35193506 · BMC Bioinformatics · 2022
L1
94/100
Gene Expression Analysis Platform (GEAP): A highly customizable, fast, versatile and ready-to-use microarray analysis platform.
PMID 34927664 · Genet Mol Biol · 2021
L1
83/100
Computationally scalable regression modeling for ultrahigh-dimensional omics data with ParProx.
PMID 34254998 · Brief Bioinform · 2021
L1
79/100
TSUNAMI: Translational Bioinformatics Tool Suite for Network Analysis and Mining.
PMID 33705981 · Genomics Proteomics Bioinformatics · 2021
L1
79/100
Curation of over 10 000 transcriptomic studies to enable data reuse.
PMID 33599246 · Database (Oxford) · 2021
L1
80/100
Colorectal Cancer Prediction Based on Weighted Gene Co-Expression Network Analysis and Variational Auto-Encoder.⚑
PMID 32825264 · Biomolecules · 2020
L1
80/100
⚑
An NMF-Based Methodology for Selecting Biomarkers in the Landscape of Genes of Heterogeneous Cancer-Associated Fibroblast Populations.
PMID 32425511 · Bioinform Biol Insights · 2020
L1
84/100
Scalable Prediction of Acute Myeloid Leukemia Using High-Dimensional Machine Learning and Blood Transcriptomics.
PMID 31918046 · iScience · 2019
L1
96/100
Eye in a Disk: eyeIntegration Human Pan-Eye and Body Transcriptome Database Version 1.0.
PMID 31343654 · Invest Ophthalmol Vis Sci · 2019
L1
94/100
pysradb: A Python package to query next-generation sequencing metadata and data from NCBI Sequence Read Archive.
PMID 31114675 · F1000Res · 2019
L1
90/100
pwrEWAS: a user-friendly tool for comprehensive power estimation for epigenome wide association studies (EWAS).
PMID 31035919 · BMC Bioinformatics · 2019
L1
88/100
PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data.
PMID 30951143 · Database (Oxford) · 2019
L1
80/100
SMAGEXP: a galaxy tool suite for transcriptomics data meta-analysis.
PMID 30698691 · Gigascience · 2019
L1
82/100