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64 matching publication(s)
Intratumoral heterogeneity in microsatellite instability status at single-cell resolution.
PMID 41767255 · iScience · 2026
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100/100
ConNIS and labeling instability: New statistical methods for improving the detection of essential genes in TraDIS libraries.
PMID 41790830 · PLoS Comput Biol · 2026
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83/100
Accelerating rare disease diagnostics by linking DNA and RNA through an explainable and interactive RNA-guided workflow.
PMID 41685349 · NAR Genom Bioinform · 2026
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Integrative analysis of transcriptomic data reveals a predictive gene signature for chemoradiotherapy response in rectal cancer.
PMID 41550766 · iScience · 2025
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50/100
Enhanced microRNA accumulation and gene silencing efficiency through optimized precursor base pairing.
PMID 41505763 · Plant J · 2026
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87/100
Integrated analysis of post-transcriptional regulations reveals insights into acute myeloid leukemia.⚑
PMID 41407883 · Commun Biol · 2025
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ASTRA: a comprehensive resource of stress-induced transcriptional activity in human cell lines.⚑
PMID 41263110 · Nucleic Acids Res · 2026
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73/100
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Network Controllability Reveals Key Mitigation Points for Tumor-Promoting Signaling in Tumor-Educated Platelets.
PMID 41226816 · Int J Mol Sci · 2025
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Allele-specific immune gene quantification and expression analysis in single-cell RNA-seq data.
PMID 41229397 · NAR Genom Bioinform · 2025
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Identification of Key Differentially Expressed Genes in Arabidopsis thaliana Under Short- and Long-Term High Light Stress.
PMID 40869111 · Int J Mol Sci · 2025
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75/100
Improved epigenetic age prediction models by combining sex chromosome and autosomal markers.
PMID 40665390 · Epigenetics Chromatin · 2025
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48/100
Statistical framework for calling allelic imbalance in high-throughput sequencing data.
PMID 39966391 · Nat Commun · 2025
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89/100
Multi-INTACT: integrative analysis of the genome, transcriptome, and proteome identifies causal mechanisms of complex traits.
PMID 39901160 · Genome Biol · 2025
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86/100
The Multi-State Epigenetic Pacemaker enables the identification of combinations of factors that influence DNA methylation.
PMID 39549198 · Geroscience · 2024
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54/100
A comparative analysis of blastoid models through single-cell transcriptomics.
PMID 39524369 · iScience · 2024
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60/100
Community assessment of methods to deconvolve cellular composition from bulk gene expression.
PMID 39191725 · Nat Commun · 2024
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63/100
Mapping the Development of Human Spermatogenesis Using Transcriptomics-Based Data: A Scoping Review.
PMID 39000031 · Int J Mol Sci · 2024
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No computation
Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in DSRCTs.
PMID 38781959 · Cell Rep Med · 2024
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Design of a targeted blood transcriptional panel for monitoring immunological changes accompanying pregnancy.
PMID 38352867 · Front Immunol · 2024
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73/100
Refining breast cancer biomarker discovery and drug targeting through an advanced data-driven approach.
PMID 38253993 · BMC Bioinformatics · 2024
59/100
Benefit of using interaction effects for the analysis of high-dimensional time-response or dose-response data for two-group comparisons.
PMID 38012163 · Sci Rep · 2023
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92/100
TransOrGAN: An Artificial Intelligence Mapping of Rat Transcriptomic Profiles between Organs, Ages, and Sexes.
PMID 37200521 · Chem Res Toxicol · 2023
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84/100
On the holobiont 'predictome' of immunocompetence in pigs.⚑
PMID 37127575 · Genet Sel Evol · 2023
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40/100
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Software JimenaE allows efficient dynamic simulations of Boolean networks, centrality and system state analysis.⚑
PMID 36725967 · Sci Rep · 2023
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74/100
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An individualized causal framework for learning intercellular communication networks that define microenvironments of individual tumors.
PMID 36548438 · PLoS Comput Biol · 2022
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67/100
Optimisation of the core subset for the APY approximation of genomic relationships.
PMID 36418945 · Genet Sel Evol · 2022
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85/100
An integrated in silico-in vitro approach for identifying therapeutic targets against osteoarthritis.
PMID 36352408 · BMC Biol · 2022
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84/100
Assessment of genotyping array performance for genome-wide association studies and imputation in African cattle.
PMID 36057548 · Genet Sel Evol · 2022
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Identification of the stress granule transcriptome via RNA-editing in single cells and in vivo.
PMID 35784648 · Cell Rep Methods · 2022
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66/100
Deconvolution of the hematopoietic stem cell microenvironment reveals a high degree of specialization and conservation.
PMID 35494238 · iScience · 2022
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60/100
Identification of phenotype-specific networks from paired gene expression-cell shape imaging data.
PMID 35197309 · Genome Res · 2022
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Comparative analysis of molecular signatures reveals a hybrid approach in breast cancer: Combining the Nottingham Prognostic Index with gene expressions into a⚑
PMID 35143511 · PLoS One · 2022
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48/100
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Differentially expressed genes reflect disease-induced rather than disease-causing changes in the transcriptome.
PMID 34561431 · Nat Commun · 2021
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Application of alternative de novo motif recognition models for analysis of structural heterogeneity of transcription factor binding sites: a case study of FOXA
PMID 34547062 · Vavilovskii Zhurnal Genet Selektsii · 2021
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62/100
Similarities and Differences in Gene Expression Networks Between the Breast Cancer Cell Line Michigan Cancer Foundation-7 and Invasive Human Breast Cancer Tissu
PMID 34056582 · Front Artif Intell · 2021
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92/100
treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses.
PMID 34001188 · Genome Biol · 2021
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73/100
Estimation of peptide elongation times from ribosome profiling spectra.
PMID 33885812 · Nucleic Acids Res · 2021
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76/100
An OMICs-based meta-analysis to support infection state stratification.
PMID 33560295 · Bioinformatics · 2021
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44/100
A Meta-Analysis of Wolbachia Transcriptomics Reveals a Stage-Specific Wolbachia Transcriptional Response Shared Across Different Hosts.⚑
PMID 32718933 · G3 (Bethesda) · 2020
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89/100
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A crowdsourced set of curated structural variants for the human genome.
PMID 32559231 · PLoS Comput Biol · 2020
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71/100
An NMF-Based Methodology for Selecting Biomarkers in the Landscape of Genes of Heterogeneous Cancer-Associated Fibroblast Populations.
PMID 32425511 · Bioinform Biol Insights · 2020
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84/100
miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems.
PMID 32374865 · Nucleic Acids Res · 2020
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61/100
The liver as an immunological barrier redefined by single-cell analysis.
PMID 32176810 · Immunology · 2020
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100/100
Transcriptomic profiling of skeletal muscle adaptations to exercise and inactivity.
PMID 31980607 · Nat Commun · 2020
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52/100
PulmonDB: a curated lung disease gene expression database.⚑
PMID 31949184 · Sci Rep · 2020
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53/100
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mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations.
PMID 31799603 · Nucleic Acids Res · 2020
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89/100
Structure of the intergenic spacers in chicken ribosomal DNA.
PMID 31655542 · Genet Sel Evol · 2019
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Contribution of retrotransposition to developmental disorders.
PMID 31604926 · Nat Commun · 2019
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79/100
Spatially clustered loci with multiple enhancers are frequent targets of HIV-1 integration.
PMID 31492853 · Nat Commun · 2019
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77/100