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32 matching publication(s)

Publication	Journal	Year	Score	Verdict
Prognostic biomarker discovery in pancreatic cancer through hybrid ensemble feature selection and multi-omics data. PMID 41957754	BioData Min	2026	92	L1 92/100
Prediction, syntax and semantic grounding in the brain and large language models. PMID 41807493	Sci Rep	2026	86	L1 86/100
ConNIS and labeling instability: New statistical methods for improving the detection of essential genes in TraDIS libraries. PMID 41790830	PLoS Comput Biol	2026	83	L1 83/100
MCPmed: a call for Model Context Protocol-enabled bioinformatics web services for LLM-driven discovery. ⚑ PMID 41729821	Brief Bioinform	2026	80	L1 80/100 ⚑
Accelerating rare disease diagnostics by linking DNA and RNA through an explainable and interactive RNA-guided workflow. PMID 41685349	NAR Genom Bioinform	2026	—	L1 No data access
Public Omics Explorer (POE): Enabling integrative semantic search across GEO omics datasets based on PubMed publications. PMID 41282419	Comput Struct Biotechnol J	2025	83	L1 83/100
randPedPCA: rapid approximation of principal components from large pedigrees. PMID 40877802	Genet Sel Evol	2025	84	L1 84/100
Statistical framework for calling allelic imbalance in high-throughput sequencing data. PMID 39966391	Nat Commun	2025	89	L1 89/100
Rfam 15: RNA families database in 2025. PMID 39526405	Nucleic Acids Res	2025	68	L1 68/100
PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testin PMID 38860884	Microb Genom	2024	75	L1 75/100
Benefit of using interaction effects for the analysis of high-dimensional time-response or dose-response data for two-group comparisons. PMID 38012163	Sci Rep	2023	92	L1 92/100
Geometric Reliability of Super-Resolution Reconstructed Images from Clinical Fetal MRI in the Second Trimester. PMID 37284977	Neuroinformatics	2023	—	L1 No data access
Software JimenaE allows efficient dynamic simulations of Boolean networks, centrality and system state analysis. ⚑ PMID 36725967	Sci Rep	2023	74	L1 74/100 ⚑
GeMI: interactive interface for transformer-based Genomic Metadata Integration. PMID 35657113	Database (Oxford)	2022	64	L1 64/100
Comparative analysis of molecular signatures reveals a hybrid approach in breast cancer: Combining the Nottingham Prognostic Index with gene expressions into a ⚑ PMID 35143511	PLoS One	2022	48	L1 48/100 ⚑
Application of alternative de novo motif recognition models for analysis of structural heterogeneity of transcription factor binding sites: a case study of FOXA PMID 34547062	Vavilovskii Zhurnal Genet Selektsii	2021	62	L1 62/100
treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses. PMID 34001188	Genome Biol	2021	73	L1 73/100
Omics Playground: a comprehensive self-service platform for visualization, analytics and exploration of Big Omics Data. PMID 33575569	NAR Genom Bioinform	2019	61	L1 61/100
An NMF-Based Methodology for Selecting Biomarkers in the Landscape of Genes of Heterogeneous Cancer-Associated Fibroblast Populations. PMID 32425511	Bioinform Biol Insights	2020	84	L1 84/100
MasterOfPores: A Workflow for the Analysis of Oxford Nanopore Direct RNA Sequencing Datasets. PMID 32256520	Front Genet	2020	50	L1 50/100
Integrative network modeling reveals mechanisms underlying T cell exhaustion. PMID 32024856	Sci Rep	2020	59	L1 59/100
Scalable Prediction of Acute Myeloid Leukemia Using High-Dimensional Machine Learning and Blood Transcriptomics. PMID 31918046	iScience	2019	96	L1 96/100
Automatic discovery of 100-miRNA signature for cancer classification using ensemble feature selection. PMID 31533612	BMC Bioinformatics	2019	69	L1 69/100
SMAC, a computational system to link literature, biomedical and expression data. PMID 31324861	Sci Rep	2019	50	L1 50/100
Reusable building blocks in biological systems. PMID 30958230	J R Soc Interface	2018	82	L1 82/100
Sequencing of human genomes with nanopore technology. PMID 31015479	Nat Commun	2019	75	L1 75/100
PanglaoDB: a web server for exploration of mouse and human single-cell RNA sequencing data. PMID 30951143	Database (Oxford)	2019	80	L1 80/100
SMAGEXP: a galaxy tool suite for transcriptomics data meta-analysis. PMID 30698691	Gigascience	2019	82	L1 82/100
First step toward gene expression data integration: transcriptomic data acquisition with COMMAND>_. ⚑ PMID 30691411	BMC Bioinformatics	2019	30	L1 30/100 ⚑
MetaMap: an atlas of metatranscriptomic reads in human disease-related RNA-seq data. PMID 29901703	Gigascience	2018	95	L1 95/100
Nimbus: a design-driven analyses suite for amplicon-based NGS data. PMID 29538618	Bioinformatics	2018	64	L1 64/100
Metavisitor, a Suite of Galaxy Tools for Simple and Rapid Detection and Discovery of Viruses in Deep Sequence Data. PMID 28045932	PLoS One	2017	78	L1 78/100