Publications 43 Datasets 392.5k Experiments 4.7k

Explore

Filters: Europe ✕ bulk-rna-seq ✕ clear all

43 matching publication(s)

Publication	Journal	Year	Score	Verdict
Metatranscriptomics From a Small Aquatic System: Microeukaryotic Community Functions Through the Diurnal Cycle. PMID 32523568	Front Microbiol	2020	97	L1 97/100
Enhanced microRNA accumulation and gene silencing efficiency through optimized precursor base pairing. PMID 41505763	Plant J	2026	87	L1 87/100
Public Omics Explorer (POE): Enabling integrative semantic search across GEO omics datasets based on PubMed publications. PMID 41282419	Comput Struct Biotechnol J	2025	83	L1 83/100
Blood and tissue correlates of steroid non-response in checkpoint inhibition-induced immune-related adverse events. PMID 41254329	Commun Med (Lond)	2025	71	L1 71/100
Network Controllability Reveals Key Mitigation Points for Tumor-Promoting Signaling in Tumor-Educated Platelets. PMID 41226816	Int J Mol Sci	2025	84	L1 84/100
Distinct senotypes in p16- and p21-positive cells across human and mouse aging tissues. PMID 41162753	EMBO J	2025	50	L1 50/100
Under the Shadow: Old-biased Genes Are Subject to Weak Purifying Selection at Both the Tissue- and Cell Type-Specific Levels. PMID 41092135	Genome Biol Evol	2025	93	L1 93/100
Identification of a PRDM1-regulated T cell network to regulate atherosclerotic plaque inflammation. PMID 41039608	Genome Med	2025	100	L1 100/100
Genetic parallels in biomineralization of the calcareous sponge Sycon ciliatum and stony corals. PMID 40922549	Elife	2025	50	L1 50/100
A comparative analysis of blastoid models through single-cell transcriptomics. PMID 39524369	iScience	2024	60	L1 60/100
Why an integrated view of gene expression studies on hematopoiesis in mouse aging is better than the sum of their parts. PMID 38627103	FEBS Lett	2024	75	L1 75/100
Design of a targeted blood transcriptional panel for monitoring immunological changes accompanying pregnancy. PMID 38352867	Front Immunol	2024	73	L1 73/100
The genome of the ant Tetramorium bicarinatum reveals a tandem organization of venom peptides genes allowing the prediction of their regulatory and evolutionary PMID 38245722	BMC Genomics	2024	100	L1 100/100
Single-cell transcriptomics and chromatin accessibility profiling elucidate the kidney-protective mechanism of mineralocorticoid receptor antagonists. PMID 37906287	J Clin Invest	2024	95	L1 95/100
Identification of herpesvirus transcripts from genomic regions around the replication origins. PMID 37773348	Sci Rep	2023	59	L1 59/100
Loss of CD4+ T cell-intrinsic arginase 1 accelerates Th1 response kinetics and reduces lung pathology during influenza infection. PMID 37572656	Immunity	2023	68	L1 68/100
Gene Regulatory Interactions at Lamina-Associated Domains. ⚑ PMID 36833261	Genes (Basel)	2023	31	L1 31/100 ⚑
Integrating transcriptomic datasets across neurological disease identifies unique myeloid subpopulations driving disease-specific signatures. ⚑ PMID 36527260	Glia	2022	26	L1 26/100 ⚑
Deconvolution of the hematopoietic stem cell microenvironment reveals a high degree of specialization and conservation. PMID 35494238	iScience	2022	60	L1 60/100
Severe COVID-19 Shares a Common Neutrophil Activation Signature with Other Acute Inflammatory States. PMID 35269470	Cells	2022	88	L2 88/100
Vascular adhesion protein-1 defines a unique subpopulation of human hematopoietic stem cells and regulates their proliferation. PMID 34719737	Cell Mol Life Sci	2021	50	L1 50/100
Antigen and checkpoint receptor engagement recalibrates T cell receptor signal strength. ⚑ PMID 34534438	Immunity	2021	37	L1 37/100 ⚑
Estimation of peptide elongation times from ribosome profiling spectra. PMID 33885812	Nucleic Acids Res	2021	76	L1 76/100
Circulating mucosal-associated invariant T cells identify patients responding to anti-PD-1 therapy. PMID 33723257	Nat Commun	2021	70	L1 70/100
Manually curated transcriptomics data collection for toxicogenomic assessment of engineered nanomaterials. PMID 33558569	Sci Data	2021	94	L1 94/100
Inhibition of SARS-CoV-2 Infections in Engineered Human Tissues Using Clinical-Grade Soluble Human ACE2. PMID 32333836	Cell	2020	87	L1 87/100
STAT3-dependent analysis reveals PDK4 as independent predictor of recurrence in prostate cancer. PMID 32323921	Mol Syst Biol	2020	66	L1 66/100
mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations. PMID 31799603	Nucleic Acids Res	2020	89	L1 89/100
Structure of the intergenic spacers in chicken ribosomal DNA. PMID 31655542	Genet Sel Evol	2019	80	L1 80/100
CRISPR/Cas9 Screens Reveal Multiple Layers of B cell CD40 Regulation. PMID 31365872	Cell Rep	2019	—	L1 No data access
Transcriptome maps of general eukaryotic RNA degradation factors. PMID 31135339	Elife	2019	60	L1 60/100
sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression. PMID 31114926	Nucleic Acids Res	2019	—	not yet assessed
Predicting enhancers in mammalian genomes using supervised hidden Markov models. PMID 30917778	BMC Bioinformatics	2019	70	L1 70/100
SMAGEXP: a galaxy tool suite for transcriptomics data meta-analysis. PMID 30698691	Gigascience	2019	82	L1 82/100
Trans-ethnic association study of blood pressure determinants in over 750,000 individuals. PMID 30578418	Nat Genet	2018	—	L1 No data access
Firefly genomes illuminate parallel origins of bioluminescence in beetles. PMID 30324905	Elife	2018	93	L1 93/100
Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation. PMID 29783948	BMC Genomics	2018	85	L1 85/100
Benefit from decline: the primary transcriptome of Alteromonas macleodii str. Te101 during Trichodesmium demise. ⚑ PMID 29335641	ISME J	2018	—	L1 No data access ⚑
Viral Diagnostics in Plants Using Next Generation Sequencing: Computational Analysis in Practice. PMID 29123534	Front Plant Sci	2017	100	L1 100/100
Analysis of the genome of the New Zealand giant collembolan (Holacanthella duospinosa) sheds light on hexapod evolution. PMID 29041914	BMC Genomics	2017	72	L1 72/100
Metavisitor, a Suite of Galaxy Tools for Simple and Rapid Detection and Discovery of Viruses in Deep Sequence Data. PMID 28045932	PLoS One	2017	78	L1 78/100
Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations a PMID 27832824	Genome Biol	2016	84	L1 84/100
Conservation and losses of non-coding RNAs in avian genomes. PMID 25822729	PLoS One	2015	100	L1 100/100