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26 matching publication(s)

Publication	Journal	Year	Score	Verdict
Statistical framework for calling allelic imbalance in high-throughput sequencing data. PMID 39966391	Nat Commun	2025	89	L1 89/100
A comparative analysis of blastoid models through single-cell transcriptomics. PMID 39524369	iScience	2024	60	L1 60/100
Community assessment of methods to deconvolve cellular composition from bulk gene expression. PMID 39191725	Nat Commun	2024	63	L1 63/100
Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in DSRCTs. PMID 38781959	Cell Rep Med	2024	76	L1 76/100
Refining breast cancer biomarker discovery and drug targeting through an advanced data-driven approach. PMID 38253993	BMC Bioinformatics	2024	59	59/100
Benefit of using interaction effects for the analysis of high-dimensional time-response or dose-response data for two-group comparisons. PMID 38012163	Sci Rep	2023	92	L1 92/100
TransOrGAN: An Artificial Intelligence Mapping of Rat Transcriptomic Profiles between Organs, Ages, and Sexes. PMID 37200521	Chem Res Toxicol	2023	84	L1 84/100
On the holobiont 'predictome' of immunocompetence in pigs. ⚑ PMID 37127575	Genet Sel Evol	2023	40	L1 40/100 ⚑
Optimisation of the core subset for the APY approximation of genomic relationships. PMID 36418945	Genet Sel Evol	2022	85	L1 85/100
An integrated in silico-in vitro approach for identifying therapeutic targets against osteoarthritis. PMID 36352408	BMC Biol	2022	84	L1 84/100
Assessment of genotyping array performance for genome-wide association studies and imputation in African cattle. PMID 36057548	Genet Sel Evol	2022	90	L1 90/100
Identification of the stress granule transcriptome via RNA-editing in single cells and in vivo. PMID 35784648	Cell Rep Methods	2022	66	L1 66/100
Deconvolution of the hematopoietic stem cell microenvironment reveals a high degree of specialization and conservation. PMID 35494238	iScience	2022	60	L1 60/100
Identification of phenotype-specific networks from paired gene expression-cell shape imaging data. PMID 35197309	Genome Res	2022	100	L1 100/100
Comparative analysis of molecular signatures reveals a hybrid approach in breast cancer: Combining the Nottingham Prognostic Index with gene expressions into a ⚑ PMID 35143511	PLoS One	2022	48	L1 48/100 ⚑
treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses. PMID 34001188	Genome Biol	2021	73	L1 73/100
A Meta-Analysis of Wolbachia Transcriptomics Reveals a Stage-Specific Wolbachia Transcriptional Response Shared Across Different Hosts. ⚑ PMID 32718933	G3 (Bethesda)	2020	89	L1 89/100 ⚑
A crowdsourced set of curated structural variants for the human genome. PMID 32559231	PLoS Comput Biol	2020	71	L1 71/100
An NMF-Based Methodology for Selecting Biomarkers in the Landscape of Genes of Heterogeneous Cancer-Associated Fibroblast Populations. PMID 32425511	Bioinform Biol Insights	2020	84	L1 84/100
The liver as an immunological barrier redefined by single-cell analysis. PMID 32176810	Immunology	2020	100	L1 100/100
PulmonDB: a curated lung disease gene expression database. ⚑ PMID 31949184	Sci Rep	2020	53	L1 53/100 ⚑
Structure of the intergenic spacers in chicken ribosomal DNA. PMID 31655542	Genet Sel Evol	2019	80	L1 80/100
Predicting enhancers in mammalian genomes using supervised hidden Markov models. PMID 30917778	BMC Bioinformatics	2019	70	L1 70/100
Immuno-detection by sequencing enables large-scale high-dimensional phenotyping in cells. PMID 29921844	Nat Commun	2018	96	L1 96/100
MetaMap: an atlas of metatranscriptomic reads in human disease-related RNA-seq data. PMID 29901703	Gigascience	2018	95	L1 95/100
Conservation and losses of non-coding RNAs in avian genomes. PMID 25822729	PLoS One	2015	100	L1 100/100