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21 matching publication(s)

Publication	Journal	Year	Score	Verdict
Nucleosome regulatory dynamics in response to TGFβ. PMID 24771338	Nucleic Acids Res	2014	59	L1 59/100
Enriched domain detector: a program for detection of wide genomic enrichment domains robust against local variations. PMID 24782521	Nucleic Acids Res	2014	79	L1 79/100
High-resolution transcriptome and genome-wide dynamics of RNA polymerase and NusA in Mycobacterium tuberculosis. PMID 23222129	Nucleic Acids Res	2012	69	L1 69/100
Expression Atlas update--a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments. PMID 24304889	Nucleic Acids Res	2013	84	L1 84/100
Ensembl 2013. PMID 23203987	Nucleic Acids Res	2012	85	L1 85/100
Accurate chromatin marks peak calling with Omnipeak. PMID 41521664	Nucleic Acids Res	2026	77	L1 77/100
ASTRA: a comprehensive resource of stress-induced transcriptional activity in human cell lines. ⚑ PMID 41263110	Nucleic Acids Res	2026	73	L1 73/100 ⚑
Rfam 15: RNA families database in 2025. PMID 39526405	Nucleic Acids Res	2025	68	L1 68/100
A computationally-enhanced hiCLIP atlas reveals Staufen1-RNA binding features and links 3' UTR structure to RNA metabolism. PMID 37013995	Nucleic Acids Res	2023	72	L1 72/100
MirDIP 5.2: tissue context annotation and novel microRNA curation. PMID 36453996	Nucleic Acids Res	2023	89	L1 89/100
Phosphorylation of ribosomal protein S6 differentially affects mRNA translation based on ORF length. PMID 34871442	Nucleic Acids Res	2021	58	L1 58/100
metaGEM: reconstruction of genome scale metabolic models directly from metagenomes. PMID 34614189	Nucleic Acids Res	2021	64	64/100
TRAPID 2.0: a web application for taxonomic and functional analysis of de novo transcriptomes. PMID 34197621	Nucleic Acids Res	2021	60	L1 60/100
Estimation of peptide elongation times from ribosome profiling spectra. PMID 33885812	Nucleic Acids Res	2021	76	L1 76/100
Taxonomic analysis of metagenomic data with kASA. PMID 33784400	Nucleic Acids Res	2021	78	78/100
4-Methylcytosine DNA modification is critical for global epigenetic regulation and virulence in the human pathogen Leptospira interrogans. PMID 33301041	Nucleic Acids Res	2020	78	L1 78/100
miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems. PMID 32374865	Nucleic Acids Res	2020	61	L1 61/100
mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations. PMID 31799603	Nucleic Acids Res	2020	89	L1 89/100
sRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression. PMID 31114926	Nucleic Acids Res	2019	—	not yet assessed
Bayesian prediction of RNA translation from ribosome profiling. ⚑ PMID 28126919	Nucleic Acids Res	2017	62	62/100 ⚑
Exposure to the widely used herbicide atrazine results in deregulation of global tissue-specific RNA transcription in the third generation and is associated wit ⚑ PMID 27655631	Nucleic Acids Res	2016	10	L1 10/100 ⚑