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44 matching publication(s)

Publication	Journal	Year	Score	Verdict
Deep transcriptomics reveals cell-specific isoforms of pan-neuronal genes. PMID 40379625	Nat Commun	2025	84	L1 84/100
Identity rather than 3D position informs splicing of rare introns in the human genome. PMID 41561379	iScience	2025	98	L1 98/100
Assembly of Macromolecular Complexes in the Whole-Cell Model of a Minimal Cell. PMID 41427637	J Phys Chem B	2025	67	L1 67/100
Advances in genomic and pharmacokinetic profiling for clinical stratification of metastatic breast cancer. PMID 41369820	Discov Oncol	2025	59	L1 59/100
Widespread mono- and oligoadenylation direct small noncoding RNA maturation versus degradation fates. PMID 41350938	EMBO J	2025	78	L1 78/100
Microglial Fkbp5 Impairs Post-Stroke Vascular Integrity and Regeneration by Promoting Yap1-Mediated Glycolysis and Oxidative Phosphorylation. PMID 41355597	Adv Sci (Weinh)	2025	50	L1 50/100
Smart spatial omics (S2-omics) optimizes region of interest selection to capture molecular heterogeneity in diverse tissues. PMID 41298871	Nat Cell Biol	2025	100	L1 100/100
A four-gene signature from blood to exclude bacterial etiology of lower respiratory tract infection in adults. PMID 41285807	Nat Commun	2025	94	L1 94/100
Directly observing the magnetic rope contraction and expansion in space. ⚑ PMID 41298493	Nat Commun	2025	61	L1 61/100 ⚑
Plasmid transmission dynamics and evolution of partner quality in a natural population of Rhizobium leguminosarum. PMID 41212030	mBio	2025	86	L1 86/100
Cell type- and species-specific regulation of hepatic lncRNAs by TCDD-activated aryl hydrocarbon receptor. PMID 41136526	Sci Rep	2025	71	L1 71/100
GlASS - Global Aggregation of Stream Silica. PMID 41115898	Sci Data	2025	89	L1 89/100
Single-cell dissection of chronic lung allograft dysfunction reveals convergent and distinct fibrotic mechanisms. PMID 41122970	JCI Insight	2025	75	L1 75/100
DeepRNA-Reg: a deep-learning based approach for comparative analysis of CLIP experiments. PMID 41055236	RNA Biol	2025	100	L1 100/100
Identification of a PRDM1-regulated T cell network to regulate atherosclerotic plaque inflammation. PMID 41039608	Genome Med	2025	100	L1 100/100
A Meta-Analysis of the Effects of Acute Sleep Deprivation on the Cortical Transcriptome in Rodent Models. PMID 41031900	J Sleep Res	2025	96	L1 96/100
Generative and integrative modeling for transcriptomics with formalin fixed paraffin embedded material. PMID 41029822	J Transl Med	2025	67	L1 67/100
Caecilians maintain a functional long-wavelength-sensitive cone opsin gene despite signatures of relaxed selection and more than 200 million years of fossoriali ⚑ PMID 40990923	Evolution	2025	64	L1 64/100 ⚑
The systematic assessment of completeness of public metadata accompanying omics studies in the Gene Expression Omnibus data repository. PMID 40926267	Genome Biol	2025	99	L1 99/100
randPedPCA: rapid approximation of principal components from large pedigrees. PMID 40877802	Genet Sel Evol	2025	84	L1 84/100
Chemist: A Domain-Specific Language by Chemists for Chemists. PMID 40815845	J Phys Chem A	2025	89	89/100
Precise modulation of BRG1 levels reveals features of mSWI/SNF dosage sensitivity. PMID 40846763	Nat Genet	2025	75	L1 75/100
Interpretable and integrative analysis of single-cell multiomics with scMKL. PMID 40770488	Commun Biol	2025	65	L1 65/100
Cell type differences in human cytomegalovirus transcription and epigenetic regulation with insights into major immediate-early enhancer-promoter control. PMID 40758707	PLoS Pathog	2025	90	90/100
L-Arabinose Alters the E. coli Transcriptome to Favor Biofilm Growth and Enhances Survival During Fluoroquinolone Stress. PMID 40732174	Microorganisms	2025	74	L1 74/100
Transcriptome-Proteome Profiling in Burkholderia thailandensis during the Transition from Exponential to Stationary Phase. PMID 40680064	J Proteome Res	2025	80	L1 80/100
Artificial Intelligence Approach in Machine Learning-Based Modeling and Networking of the Coronavirus Pathogenesis Pathway. PMID 40699865	Curr Issues Mol Biol	2025	—	L1 No data access
COVID-19 vaccination atlas using an integrative systems vaccinology approach. PMID 40456760	NPJ Vaccines	2025	69	L1 69/100
Genomic profiling of Streptococcus agalactiae (Group B Streptococcus) isolates from pregnant women in northeastern Mexico: PMID 40416609	PeerJ	2025	84	L2 84/100
ChIP-seq Data Processing and Relative and Quantitative Signal Normalization for Saccharomyces cerevisiae. PMID 40364978	Bio Protoc	2025	100	L1 100/100
Protocol for assessing regulatory elements in murine heart using an AAV9-based massively parallel reporter assay. PMID 40252222	STAR Protoc	2025	93	L1 93/100
Constraints to gene flow increase the risk of genome erosion in the Ngorongoro Crater lion population. PMID 40258987	Commun Biol	2025	68	L1 68/100
GRAMD1B is a regulator of lipid homeostasis, autophagic flux and phosphorylated tau. PMID 40204713	Nat Commun	2025	91	L1 91/100
GeneSetCart: assembling, augmenting, combining, visualizing, and analyzing gene sets. ⚑ PMID 40208796	Gigascience	2025	76	L1 76/100 ⚑
Dynamic Gene Attention Focus (DyGAF): Enhancing Biomarker Identification Through Dual-Model Attention Networks. ⚑ PMID 40160891	Bioinform Biol Insights	2025	44	L1 44/100 ⚑
Methylation patterns of the nasal epigenome of hospitalized SARS-CoV-2 positive patients reveal insights into molecular mechanisms of COVID-19. PMID 40170038	BMC Med Genomics	2025	—	not yet assessed
Data-driven projections of candidate enhancer-activating SNPs in immune regulation. PMID 40011812	BMC Genomics	2025	57	L1 57/100
Diversity and Structure of the Prokaryotic Community in Tropical Monomictic Reservoir. ⚑ PMID 40072582	Microb Ecol	2025	—	L1 No data access ⚑
7SL RNA and signal recognition particle orchestrate a global cellular response to acute thermal stress. PMID 39952919	Nat Commun	2025	93	L1 93/100
Multi-INTACT: integrative analysis of the genome, transcriptome, and proteome identifies causal mechanisms of complex traits. PMID 39901160	Genome Biol	2025	86	L1 86/100
Single-Cell Hi-C Technologies and Computational Data Analysis. PMID 39887949	Adv Sci (Weinh)	2025	80	L1 80/100
Correcting scale distortion in RNA sequencing data. PMID 39875825	BMC Bioinformatics	2025	76	L1 76/100
Enhancing chemotherapy response prediction via matched colorectal tumor-organoid gene expression analysis and network-based biomarker selection. PMID 39754813	Transl Oncol	2025	78	L1 78/100
Molecular Epidemiology of Invasive Group B Streptococcus in South Africa, 2019-2020. PMID 39737783	J Infect Dis	2025	—	L1 No data access