Explore
← New search
84 matching publication(s)
Deep transcriptomics reveals cell-specific isoforms of pan-neuronal genes.
PMID 40379625 · Nat Commun · 2025
L1
84/100
Population structure analysis of Salmonella serovar Muenchen to redefine geno-serotyping using genome indexing approaches.⚑
PMID 41743541 · Front Microbiol · 2026
L1
54/100
⚑
DMN-seq enriches DNA hypomethylated regions for biomarker discovery using 5-methylcytosine glycosylase.
PMID 41673887 · Genome Biol · 2026
L1
80/100
A network-based model of Aspergillus fumigatus elucidates regulators of development and defensive natural products of an opportunistic pathogen.
PMID 41505094 · Nucleic Acids Res · 2026
L1
78/100
Manual curation for improved genome annotation of the functionally extinct northern white rhinoceros (Ceratotherium simum cottoni).
PMID 41490125 · PLoS One · 2026
L1
69/100
Widespread mono- and oligoadenylation direct small noncoding RNA maturation versus degradation fates.
PMID 41350938 · EMBO J · 2025
L1
78/100
MUTACLASH: identifying functional small RNA target sites using crosslinking-induced mutations.
PMID 41330639 · RNA · 2026
L1
30/100
DeepRNA-Reg: a deep-learning based approach for comparative analysis of CLIP experiments.
PMID 41055236 · RNA Biol · 2025
L1
100/100
Generative and integrative modeling for transcriptomics with formalin fixed paraffin embedded material.
PMID 41029822 · J Transl Med · 2025
L1
67/100
Interpretable and integrative analysis of single-cell multiomics with scMKL.
PMID 40770488 · Commun Biol · 2025
L1
65/100
ChIP-seq Data Processing and Relative and Quantitative Signal Normalization for Saccharomyces cerevisiae.
PMID 40364978 · Bio Protoc · 2025
L1
100/100
Protocol for assessing regulatory elements in murine heart using an AAV9-based massively parallel reporter assay.
PMID 40252222 · STAR Protoc · 2025
L1
93/100
Dynamic Gene Attention Focus (DyGAF): Enhancing Biomarker Identification Through Dual-Model Attention Networks.⚑
PMID 40160891 · Bioinform Biol Insights · 2025
L1
44/100
⚑
Data-driven projections of candidate enhancer-activating SNPs in immune regulation.
PMID 40011812 · BMC Genomics · 2025
L1
57/100
Statistical framework for calling allelic imbalance in high-throughput sequencing data.
PMID 39966391 · Nat Commun · 2025
L1
89/100
Multi-INTACT: integrative analysis of the genome, transcriptome, and proteome identifies causal mechanisms of complex traits.
PMID 39901160 · Genome Biol · 2025
L1
86/100
RummaGEO: Automatic mining of human and mouse gene sets from GEO.
PMID 39569206 · Patterns (N Y) · 2024
L1
63/100
Charting and probing the activity of ADARs in human development and cell-fate specification.
PMID 39537590 · Nat Commun · 2024
L1
100/100
The Multi-State Epigenetic Pacemaker enables the identification of combinations of factors that influence DNA methylation.
PMID 39549198 · Geroscience · 2024
L1
54/100
Protocol for the generation of single-nuclei RNA-seq libraries and quantification of heterogeneous cell types activated during social interaction.
PMID 39423127 · STAR Protoc · 2024
L1
78/100
Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals.⚑
PMID 39418301 · PLoS Comput Biol · 2024
L1
23/100
⚑
Community assessment of methods to deconvolve cellular composition from bulk gene expression.
PMID 39191725 · Nat Commun · 2024
L1
63/100
Forseti: a mechanistic and predictive model of the splicing status of scRNA-seq reads.
PMID 38940130 · Bioinformatics · 2024
L1
87/100
DeepGSEA: explainable deep gene set enrichment analysis for single-cell transcriptomic data.
PMID 38950178 · Bioinformatics · 2024
L1
40/100
DNA binding analysis of rare variants in homeodomains reveals homeodomain specificity-determining residues.
PMID 38600112 · Nat Commun · 2024
L1
93/100
Identifying human pre-mRNA cleavage and polyadenylation factors by genome-wide CRISPR screens using a dual fluorescence readthrough reporter.
PMID 38587191 · Nucleic Acids Res · 2024
L1
68/100
Decoding and reconstructing disease relations between dry eye and depression: a multimodal investigation comprising meta-analysis, genetic pathways and Mendelia
PMID 38548265 · J Adv Res · 2024
L1
79/100
Gbdmr: identifying differentially methylated CpG regions in the human genome via generalized beta regressions.⚑
PMID 38443825 · BMC Bioinformatics · 2024
L1
62/100
⚑
Design of a targeted blood transcriptional panel for monitoring immunological changes accompanying pregnancy.
PMID 38352867 · Front Immunol · 2024
L1
73/100
spotter: a single-nucleotide resolution stochastic simulation model of supercoiling-mediated transcription and translation in prokaryotes.
PMID 37602419 · Nucleic Acids Res · 2023
L1
77/100
Systematic Assessment of Small RNA Profiling in Human Extracellular Vesicles.
PMID 37444556 · Cancers (Basel) · 2023
L1
90/100
Detecting aberrant DNA methylation in Illumina DNA methylation arrays: a toolbox and recommendations for its use.
PMID 37218167 · Epigenetics · 2023
L2
73/100
TransOrGAN: An Artificial Intelligence Mapping of Rat Transcriptomic Profiles between Organs, Ages, and Sexes.
PMID 37200521 · Chem Res Toxicol · 2023
L1
84/100
VIGET: A web portal for study of vaccine-induced host responses based on Reactome pathways and ImmPort data.
PMID 37180100 · Front Immunol · 2023
L1
64/100
Exploiting convergent phenotypes to derive a pan-cancer cisplatin response gene expression signature.
PMID 37076665 · NPJ Precis Oncol · 2023
L1
50/100
Artificial intelligence-guided discovery of gastric cancer continuum.
PMID 36692601 · Gastric Cancer · 2023
L1
71/100
An individualized causal framework for learning intercellular communication networks that define microenvironments of individual tumors.
PMID 36548438 · PLoS Comput Biol · 2022
L1
67/100
Optimisation of the core subset for the APY approximation of genomic relationships.
PMID 36418945 · Genet Sel Evol · 2022
L1
85/100
spliceJAC: transition genes and state-specific gene regulation from single-cell transcriptome data.⚑
PMID 36321549 · Mol Syst Biol · 2022
L1
53/100
⚑
Assessment of genotyping array performance for genome-wide association studies and imputation in African cattle.
PMID 36057548 · Genet Sel Evol · 2022
L1
90/100
Comprehensive enhancer-target gene assignments improve gene set level interpretation of genome-wide regulatory data.
PMID 35473573 · Genome Biol · 2022
not yet assessed
Transcriptomic-Based Quantification of the Epithelial-Hybrid-Mesenchymal Spectrum across Biological Contexts.
PMID 35053177 · Biomolecules · 2021
L1
100/100
Preparation of mouse pancreatic tumor for single-cell RNA sequencing and analysis of the data.
PMID 34927097 · STAR Protoc · 2021
L1
50/100
Bioinformatics and system biology approaches to identify pathophysiological impact of COVID-19 to the progression and severity of neurological diseases.⚑
PMID 34601390 · Comput Biol Med · 2021
L1
69/100
⚑
Differentially expressed genes reflect disease-induced rather than disease-causing changes in the transcriptome.
PMID 34561431 · Nat Commun · 2021
L1
100/100
A ChIP-exo screen of 887 Protein Capture Reagents Program transcription factor antibodies in human cells.
PMID 34426512 · Genome Res · 2021
L1
57/100
Creation of a Single Cell RNASeq Meta-Atlas to Define Human Liver Immune Homeostasis.⚑
PMID 34335581 · Front Immunol · 2021
L1
63/100
⚑
PredTAD: A machine learning framework that models 3D chromatin organization alterations leading to oncogene dysregulation in breast cancer cell lines.
PMID 34093998 · Comput Struct Biotechnol J · 2021
L1
77/100