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116 matching publication(s)
Multiomic analysis of malignant pleural mesothelioma identifies molecular axes and specialized tumor profiles driving intertumor heterogeneity.
PMID 36928603 · Nat Genet · 2023
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Shifts from cooperative to individual-based predation defense determine microbial predator-prey dynamics.
PMID 36854789 · ISME J · 2023
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A step forward for Shiga toxin-producing Escherichia coli identification and characterization in raw milk using long-read metagenomics.
PMID 36748417 · Microb Genom · 2022
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Critical Role for the Human Cytomegalovirus Major Immediate Early Proteins in Recruitment of RNA Polymerase II and H3K27Ac To an Enhancer-Like Element in Ori
PMID 36645269 · Microbiol Spectr · 2023
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MirDIP 5.2: tissue context annotation and novel microRNA curation.
PMID 36453996 · Nucleic Acids Res · 2023
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Genetic Variants in ARHGEF6 Cause Congenital Anomalies of the Kidneys and Urinary Tract in Humans, Mice, and Frogs.
PMID 36414417 · · 2023
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What the Phage: a scalable workflow for the identification and analysis of phage sequences.
PMID 36399058 · Gigascience · 2022
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Wochenende - modular and flexible alignment-based shotgun metagenome analysis.
PMID 36368923 · BMC Genomics · 2022
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Ancient variation of the AvrPm17 gene in powdery mildew limits the effectiveness of the introgressed rye Pm17 resistance g
PMID 35857869 · Proc Natl Acad Sci U S A · 2022
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Prediction of Antibiotic Susceptibility Profiles of Vibrio cholerae Isolates From Whole Genome Illumina and Nanopore Sequencing Data: CholerAegon.
PMID 35814690 · Front Microbiol · 2022
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Antibiotic Drug screening and Image Characterization Toolbox (A.D.I.C.T.): a robust imaging workflow to monitor antibiotic stress response in bacterial cells <i
PMID 35707454 · F1000Res · 2021
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BaRTv2: a highly resolved barley reference transcriptome for accurate transcript-specific RNA-seq quantification.
PMID 35704392 · Plant J · 2022
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A Decentralized Kidney Transplant Biopsy Classifier for Transplant Rejection Developed Using Genes of the Banff-Human Organ Transplant Panel.
PMID 35619722 · Front Immunol · 2022
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A bioinformatic pipeline for simulating viral integration data.
PMID 35496474 · Data Brief · 2022
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Severe COVID-19 Shares a Common Neutrophil Activation Signature with Other Acute Inflammatory States.
PMID 35269470 · Cells · 2022
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Expanding the clinical spectrum of COL2A1 related disorders by a mass like phenotype.
PMID 35296718 · · 2022
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A role for ColV plasmids in the evolution of pathogenic Escherichia coli ST58.
PMID 35115531 · Nat Commun · 2022
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Itaconate and derivatives reduce interferon responses and inflammation in influenza A virus infection.
PMID 35025971 · PLoS Pathog · 2022
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The formation of avian montane diversity across barriers and along elevational gradients.
PMID 35022441 · Nat Commun · 2022
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An integrative proteomics method identifies a regulator of translation during stem cell maintenance and differentiation.
PMID 34772928 · Nat Commun · 2021
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Systems Analysis Reveals Ageing-Related Perturbations in Retinoids and Sex Hormones in Alzheimer's and Parkinson's Diseases.
PMID 34680427 · Biomedicines · 2021
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Differentially expressed genes reflect disease-induced rather than disease-causing changes in the transcriptome.
PMID 34561431 · Nat Commun · 2021
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poreCov-An Easy to Use, Fast, and Robust Workflow for SARS-CoV-2 Genome Reconstruction via Nanopore Sequencing.
PMID 34394197 · Front Genet · 2021
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Reactivation of a developmentally silenced embryonic globin gene.
PMID 34290235 · Nat Commun · 2021
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Vaccine-induced ICOS+CD38+ circulating Tfh are sensitive biosensors of age-related changes in inflammatory pathway
PMID 34095875 · Cell Rep Med · 2021
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Similarities and Differences in Gene Expression Networks Between the Breast Cancer Cell Line Michigan Cancer Foundation-7 and Invasive Human Breast Cancer Tissu
PMID 34056582 · Front Artif Intell · 2021
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Genome-wide insights into population structure and host specificity of Campylobacter jejuni.
PMID 33990625 · Sci Rep · 2021
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Estimation of peptide elongation times from ribosome profiling spectra.
PMID 33885812 · Nucleic Acids Res · 2021
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Analysis of a photosynthetic cyanobacterium rich in internal membrane systems via gradient profiling by sequencing (Grad-seq).
PMID 33793824 · Plant Cell · 2021
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Competitive binding of STATs to receptor phospho-Tyr motifs accounts for altered cytokine responses.
PMID 33871355 · Elife · 2021
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Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager.
PMID 33777521 · PeerJ · 2021
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The oncogene AAMDC links PI3K-AKT-mTOR signaling with metabolic reprograming in estrogen receptor-positive breast cancer.
PMID 33772001 · Nat Commun · 2021
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Potentially bioavailable iron produced through benthic cycling in glaciated Arctic fjords of Svalbard.
PMID 33649339 · Nat Commun · 2021
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Current status of use of high throughput nucleotide sequencing in rheumatology.
PMID 33408124 · RMD Open · 2021
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The archives are half-empty: an assessment of the availability of microbial community sequencing data.
PMID 32859925 · Commun Biol · 2020
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Synergism between IL7R and CXCR4 drives BCR-ABL induced transformation in Philadelphia chromosome-positive acute lymphoblastic leukemia.
PMID 32581241 · Nat Commun · 2020
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Exome sequencing in 38 patients with intracranial aneurysms and subarachnoid hemorrhage.⚑
PMID 32367296 · · 2020
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What's Genetic Variation Got to Do with It? Starvation-Induced Self-Fertilization Enhances Survival in Paramecium.
PMID 32163147 · Genome Biol Evol · 2020
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Scalable Prediction of Acute Myeloid Leukemia Using High-Dimensional Machine Learning and Blood Transcriptomics.
PMID 31918046 · iScience · 2019
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The evolution of sexual signaling is linked to odorant receptor tuning in perfume-collecting orchid bees.
PMID 31932598 · Nat Commun · 2020
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From bud formation to flowering: transcriptomic state defines the cherry developmental phases of sweet cherry bud dormancy.
PMID 31830909 · BMC Genomics · 2019
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mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations.
PMID 31799603 · Nucleic Acids Res · 2020
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Dynamic reversal of random X-Chromosome inactivation during iPSC reprogramming.
PMID 31515287 · Genome Res · 2019
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Spatially clustered loci with multiple enhancers are frequent targets of HIV-1 integration.
PMID 31492853 · Nat Commun · 2019
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16p13.11 microdeletion uncovers loss-of-function of a MYH11 missense variant in a patient with megacystis-microcolon-intestinal-hypoperistalsis syndrome.
PMID 31044419 · Clinical Genetics · 2019
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The exonuclease Xrn1 activates transcription and translation of mRNAs encoding membrane proteins.
PMID 30899024 · Nat Commun · 2019
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