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70 matching publication(s)
Elucidation of the molecular responses to waterlogging in Jatropha roots by transcriptome profiling.
PMID 25520726 · Front Plant Sci · 2014
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93/100
TEMP: a computational method for analyzing transposable element polymorphism in populations.
PMID 24753423 · Nucleic Acids Res · 2014
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61/100
TRIM28 repression of retrotransposon-based enhancers is necessary to preserve transcriptional dynamics in embryonic stem cells.
PMID 23233547 · Genome Res · 2012
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78/100
Endogenous retroviral elements LTR8B and MER65 rewire PSG9 regulation to control trophoblast syncytialization and pre-eclampsia risk.
PMID 41796334 · Genome Biol · 2026
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68/100
Single-cell protein activity analysis reveals aberrant myogenesis and IGF2-PI3K pathway dependencies in MYOD1-mutant rhabdomyosarcoma.
PMID 41758938 · Sci Adv · 2026
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84/100
Integrative analysis of transcriptomic data reveals a predictive gene signature for chemoradiotherapy response in rectal cancer.
PMID 41550766 · iScience · 2025
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50/100
Integrated analysis of post-transcriptional regulations reveals insights into acute myeloid leukemia.⚑
PMID 41407883 · Commun Biol · 2025
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32/100
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In vivo prime editing rescues alternating hemiplegia of childhood in mice.
PMID 40695277 · Cell · 2025
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84/100
MACanalyzeR scRNAseq analysis tool reveals PPARγHIGH/GDF15HIGH lipid-associated macrophages facilitate thermogenic⚑
PMID 40450001 · Nat Commun · 2025
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70/100
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Direct observations of cross-scale wave-particle energy transfer in space plasmas.
PMID 39919183 · Sci Adv · 2025
94/100
Advanced Methods for Analyzing in-Situ Observations of Magnetic Reconnection.
PMID 39234211 · Space Sci Rev · 2024
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No computation
Community assessment of methods to deconvolve cellular composition from bulk gene expression.
PMID 39191725 · Nat Commun · 2024
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63/100
An atlas of the human liver diurnal transcriptome and its perturbation by hepatitis C virus infection.
PMID 39209804 · Nat Commun · 2024
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50/100
Meta-analysis of six dairy cattle breeds reveals biologically relevant candidate genes for mastitis resistance.⚑
PMID 39009986 · Genet Sel Evol · 2024
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69/100
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Single-cell multiomics profiling reveals heterogeneous transcriptional programs and microenvironment in DSRCTs.
PMID 38781959 · Cell Rep Med · 2024
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76/100
Uncertainty in the mating strategy of honeybees causes bias and unreliability in the estimates of genetic parameters.
PMID 38632535 · Genet Sel Evol · 2024
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98/100
DNA binding analysis of rare variants in homeodomains reveals homeodomain specificity-determining residues.
PMID 38600112 · Nat Commun · 2024
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93/100
Microglia maintain structural integrity during fetal brain morphogenesis.
PMID 38309258 · Cell · 2024
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68/100
The genome of the ant Tetramorium bicarinatum reveals a tandem organization of venom peptides genes allowing the prediction of their regulatory and evolutionary
PMID 38245722 · BMC Genomics · 2024
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100/100
Natural clines and human management impact the genetic structure of Algerian honey bee populations.
PMID 38114899 · Genet Sel Evol · 2023
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55/100
Loss of CD4+ T cell-intrinsic arginase 1 accelerates Th1 response kinetics and reduces lung pathology during influenza infection.
PMID 37572656 · Immunity · 2023
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68/100
A multiple super-enhancer region establishes inter-TAD interactions and controls Hoxa function in cranial neural crest.
PMID 37277355 · Nat Commun · 2023
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94/100
TrEMOLO: accurate transposable element allele frequency estimation using long-read sequencing data combining assembly and mapping-based approaches.
PMID 37013657 · Genome Biol · 2023
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89/100
Multiomic analysis of malignant pleural mesothelioma identifies molecular axes and specialized tumor profiles driving intertumor heterogeneity.
PMID 36928603 · Nat Genet · 2023
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80/100
Discovery of a novel filamentous prophage in the genome of the Mimosa pudica microsymbiont Cupriavidus taiwanensis STM 6018.⚑
PMID 36925474 · Front Microbiol · 2023
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74/100
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An improved assembly of the pearl millet reference genome using Oxford Nanopore long reads and optical mapping.
PMID 36891809 · G3 (Bethesda) · 2023
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90/100
Whole-genome sequencing of cryopreserved resources from French Large White pigs at two distinct sampling times reveals strong signatures of convergent and diver
PMID 36864379 · Genet Sel Evol · 2023
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100/100
Identification of genes influencing the evolution of Escherichia coli ST372 in dogs and humans.
PMID 36752777 · Microb Genom · 2023
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89/100
A step forward for Shiga toxin-producing Escherichia coli identification and characterization in raw milk using long-read metagenomics.
PMID 36748417 · Microb Genom · 2022
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75/100
A network-guided protocol to discover susceptibility genes in genome-wide association studies using stability selection.
PMID 36609152 · STAR Protoc · 2023
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92/100
Genetic architecture of natural variation of cardiac performance from flies to humans.
PMID 36383075 · Elife · 2022
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74/100
A novel and dual digestive symbiosis scales up the nutrition and immune system of the holobiont Rimicaris exoculata.
PMID 36333777 · Microbiome · 2022
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64/100
Mining the equine gut metagenome: poorly-characterized taxa associated with cardiovascular fitness in endurance athletes.⚑
PMID 36192523 · Commun Biol · 2022
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68/100
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RiboTaxa: combined approaches for rRNA genes taxonomic resolution down to the species level from metagenomics data revealing novelties.
PMID 36159175 · NAR Genom Bioinform · 2022
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66/100
auts2 Features and Expression Are Highly Conserved during Evolution Despite Different Evolutionary Fates Following Whole Genome Duplication.
PMID 36078102 · Cells · 2022
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50/100
Genome-wide associations of aortic distensibility suggest causality for aortic aneurysms and brain white matter hyperintensities.
PMID 35922433 · Nat Commun · 2022
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No data access
getSequenceInfo: a suite of tools allowing to get genome sequence information from public repositories.
PMID 35804320 · BMC Bioinformatics · 2022
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99/100
Deep learning from phylogenies to uncover the epidemiological dynamics of outbreaks.
PMID 35794110 · Nat Commun · 2022
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94/100
A hybrid empirical and parametric approach for managing ecosystem complexity: Water quality in Lake Geneva under nonstationary futures.
PMID 35733249 · Proc Natl Acad Sci U S A · 2022
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69/100
Transcriptional regulation and chromatin architecture maintenance are decoupled functions at the Sox2 locus.
PMID 35710138 · Genes Dev · 2022
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81/100
Utility of Triti-Map for bulk-segregated mapping of causal genes and regulatory elements in Triticeae.
PMID 35605195 · Plant Commun · 2022
L1
95/100
Genome and cuticular hydrocarbon-based species delimitation shed light on potential drivers of speciation in a Neotropical ant species complex.
PMID 35342602 · Ecol Evol · 2022
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87/100
A role for ColV plasmids in the evolution of pathogenic Escherichia coli ST58.
PMID 35115531 · Nat Commun · 2022
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95/100
A whole genome duplication drives the genome evolution of Phytophthora betacei, a closely related species to Phytophthora infestans.
PMID 34740326 · BMC Genomics · 2021
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95/100
Estimates of recent and historical effective population size in turbot, seabream, seabass and carp selective breeding programmes.
PMID 34742227 · Genet Sel Evol · 2021
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53/100
Phased differentiation of γδ T and T CD8 tumor-infiltrating lymphocytes revealed by single-cell transcriptomics of human cancers.⚑
PMID 34721945 · Oncoimmunology · 2021
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44/100
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Evolutionary Genomics of Sex-Related Chromosomes at the Base of the Green Lineage.
PMID 34599324 · Genome Biol Evol · 2021
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84/100
Dynamics of the compartmentalized Streptomyces chromosome during metabolic differentiation.
PMID 34471117 · Nat Commun · 2021
L1
97/100
Competitive binding of STATs to receptor phospho-Tyr motifs accounts for altered cytokine responses.
PMID 33871355 · Elife · 2021
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89/100