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125 matching publication(s)

Publication	Journal	Year	Score	Verdict
Detecting aberrant DNA methylation in Illumina DNA methylation arrays: a toolbox and recommendations for its use. PMID 37218167	Epigenetics	2023	73	L2 73/100
VIGET: A web portal for study of vaccine-induced host responses based on Reactome pathways and ImmPort data. PMID 37180100	Front Immunol	2023	64	L1 64/100
iBRIDGE: A Data Integration Method to Identify Inflamed Tumors from Single-cell RNA-Seq Data and Differentiate Cell Type-Specific Markers of Immune-Cell Infiltr PMID 37023414	Cancer Immunol Res	2023	94	L1 94/100
Insights into the differentiation and adaptation within Circaeasteraceae from Circaeaster agrestis genome sequencing and resequencing. ⚑ PMID 36895650	iScience	2023	49	L1 49/100 ⚑
A temporal classifier predicts histopathology state and parses acute-chronic phasing in inflammatory bowel disease patients. PMID 36694043	Commun Biol	2023	83	L1 83/100
Artificial intelligence-guided discovery of gastric cancer continuum. PMID 36692601	Gastric Cancer	2023	71	L1 71/100
Progressive transformation of the HIV-1 reservoir cell profile over two decades of antiviral therapy. PMID 36596305	Cell Host Microbe	2023	80	L1 80/100
Depletion of HIV reservoir by activation of ISR signaling in resting CD4+T cells. PMID 36590168	iScience	2022	89	L1 89/100
An individualized causal framework for learning intercellular communication networks that define microenvironments of individual tumors. PMID 36548438	PLoS Comput Biol	2022	67	L1 67/100
Autoencoder Networks Decipher the Association between Lung Cancer and Alzheimer's Disease. PMID 36518809	Comput Intell Neurosci	2022	74	L1 74/100
Gene module regulation in dilated cardiomyopathy and the role of Na/K-ATPase. ⚑ PMID 35901050	PLoS One	2022	55	L1 55/100 ⚑
SEAseq: a portable and cloud-based chromatin occupancy analysis suite. PMID 35193506	BMC Bioinformatics	2022	94	L1 94/100
Assessing Bos taurus introgression in the UOA Bos indicus assembly. PMID 34922445	Genet Sel Evol	2021	86	L1 86/100
Preparation of mouse pancreatic tumor for single-cell RNA sequencing and analysis of the data. PMID 34927097	STAR Protoc	2021	50	L1 50/100
Monocarboxylate Transporter-2 Expression Restricts Tumor Growth in a Murine Model of Lung Cancer: A Multi-Omic Analysis. ⚑ PMID 34638954	Int J Mol Sci	2021	53	L1 53/100 ⚑
PredTAD: A machine learning framework that models 3D chromatin organization alterations leading to oncogene dysregulation in breast cancer cell lines. PMID 34093998	Comput Struct Biotechnol J	2021	77	L1 77/100
Similarities and Differences in Gene Expression Networks Between the Breast Cancer Cell Line Michigan Cancer Foundation-7 and Invasive Human Breast Cancer Tissu PMID 34056582	Front Artif Intell	2021	92	L1 92/100
Fluent genomics with plyranges and tximeta. PMID 32528659	F1000Res	2020	69	L1 69/100
RNAmountAlign: Efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment. PMID 31978147	PLoS One	2020	71	L1 71/100
Evaluating sequence data quality from the Swift Accel-Amplicon CFTR Panel. PMID 31913291	Sci Data	2020	89	L1 89/100
Draft Genome Sequences of Antimicrobial-Resistant Shigella Clinical Isolates from Pakistan. PMID 31346012	Microbiol Resour Announc	2019	92	L1 92/100
Predicting position along a looping immune response trajectory. PMID 30296270	PLoS One	2018	98	L1 98/100
Genome-wide screening of potential RNase Y-processed mRNAs in the M49 serotype Streptococcus pyogenes NZ131. ⚑ PMID 29900693	Microbiologyopen	2018	57	L1 57/100 ⚑
Viewing RNA-seq data on the entire human genome. PMID 28979763	F1000Res	2017	50	L1 50/100
Long-read nanopore shotgun metagenomic DNA sequencing for river biodiversity, wildlife, pollution, and environmental health monitoring. PMID 42038409	NAR Genom Bioinform	2026	78	L1 78/100