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17 matching publication(s)

Publication	Journal	Year	Score	Verdict
Detecting DNA modifications from SMRT sequencing data by modeling sequence context dependence of polymerase kinetic. ⚑ PMID 23516341	PLoS Comput Biol	2013	44	L1 44/100 ⚑
Transcriptome profiling of Giardia intestinalis using strand-specific RNA-seq. PMID 23555231	PLoS Comput Biol	2013	74	L1 74/100
ConNIS and labeling instability: New statistical methods for improving the detection of essential genes in TraDIS libraries. PMID 41790830	PLoS Comput Biol	2026	83	L1 83/100
DAGFormer: A graph-based domain adaptation approach for single-cell cancer drug response prediction. PMID 41417875	PLoS Comput Biol	2025	—	L1 No data access
Partial correlation network analysis identifies coordinated gene expression within a regional cluster of COPD genome-wide association signals. ⚑ PMID 39418301	PLoS Comput Biol	2024	23	L1 23/100 ⚑
Gene signature discovery and systematic validation across diverse clinical cohorts for TB prognosis and response to treatment. PMID 37471455	PLoS Comput Biol	2023	100	L1 100/100
Cell-type annotation with accurate unseen cell-type identification using multiple references. PMID 37379341	PLoS Comput Biol	2023	68	L1 68/100
maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks. PMID 36719906	PLoS Comput Biol	2023	98	L1 98/100
An individualized causal framework for learning intercellular communication networks that define microenvironments of individual tumors. PMID 36548438	PLoS Comput Biol	2022	67	L1 67/100
Ten simple rules and a template for creating workflows-as-applications. PMID 36520686	PLoS Comput Biol	2022	—	L1 No computation
Inferring a spatial code of cell-cell interactions across a whole animal body. PMID 36395331	PLoS Comput Biol	2022	90	L1 90/100
Projecting contact matrices in 177 geographical regions: An update and comparison with empirical data for the COVID-19 era. PMID 34310590	PLoS Comput Biol	2021	98	L1 98/100
CRISPRbuilder-TB: "CRISPR-builder for tuberculosis". Exhaustive reconstruction of the CRISPR locus in mycobacterium tuberculosis complex using SRA. PMID 33667225	PLoS Comput Biol	2021	97	L1 97/100
Using prototyping to choose a bioinformatics workflow management system. PMID 33630841	PLoS Comput Biol	2021	—	L1 No computation
Systematic clustering algorithm for chromatin accessibility data and its application to hematopoietic cells. PMID 33253153	PLoS Comput Biol	2020	90	L1 90/100
A crowdsourced set of curated structural variants for the human genome. PMID 32559231	PLoS Comput Biol	2020	71	L1 71/100
AuPairWise: A Method to Estimate RNA-Seq Replicability through Co-expression. PMID 27082953	PLoS Comput Biol	2016	88	L1 88/100