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103 matching publication(s)
LoRA-TV: read depth profile-based clustering of tumor cells in single-cell sequencing.
PMID 38877886 · Brief Bioinform · 2024
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90/100
RAGER: A user-friendly computational platform for integrated analysis of RNA-Seq and ATAC-seq data.
PMID 42172220 · PLoS One · 2026
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63/100
Prognostic biomarker discovery in pancreatic cancer through hybrid ensemble feature selection and multi-omics data.
PMID 41957754 · BioData Min · 2026
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92/100
Wireless sensor network design with reliable and long network lifetime.
PMID 41981015 · Sci Rep · 2026
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65/100
Machine learning and free energy clustering reveal PAH protein binding linked to AD risk.
PMID 41953002 · iScience · 2026
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78/100
Machine learning-based DNA microarray analysis for disease detection using the MICRO-AI framework.⚑
PMID 41925147 · Sci Prog · 2026
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22/100
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Prediction, syntax and semantic grounding in the brain and large language models.
PMID 41807493 · Sci Rep · 2026
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86/100
ConNIS and labeling instability: New statistical methods for improving the detection of essential genes in TraDIS libraries.
PMID 41790830 · PLoS Comput Biol · 2026
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83/100
MCPmed: a call for Model Context Protocol-enabled bioinformatics web services for LLM-driven discovery.⚑
PMID 41729821 · Brief Bioinform · 2026
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80/100
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stDyer-image improves clustering analysis of spatially resolved transcriptomics and proteomics with morphological images.
PMID 41692960 · Bioinformatics · 2026
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75/100
huSA: a comprehensive database for multi-dimensional resolution of bulk, single cell and spatial transcription profiles in skin diseases.
PMID 41719583 · Database (Oxford) · 2026
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50/100
Accelerating rare disease diagnostics by linking DNA and RNA through an explainable and interactive RNA-guided workflow.
PMID 41685349 · NAR Genom Bioinform · 2026
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No data access
Spatial information matters: are traditional imputation methods effective for spatial transcriptomics data?
PMID 41627342 · Brief Bioinform · 2026
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89/100
iceDP: identifying inter-chromatin engagement via density peaks clustering algorithm.⚑
PMID 41499218 · Brief Bioinform · 2026
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53/100
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Celline: a flexible tool for one-step retrieval and integrative analysis of public single-cell RNA sequencing data.
PMID 41458999 · Front Bioinform · 2025
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64/100
DAGFormer: A graph-based domain adaptation approach for single-cell cancer drug response prediction.
PMID 41417875 · PLoS Comput Biol · 2025
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No data access
Smart spatial omics (S2-omics) optimizes region of interest selection to capture molecular heterogeneity in diverse tissues.
PMID 41298871 · Nat Cell Biol · 2025
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100/100
Public Omics Explorer (POE): Enabling integrative semantic search across GEO omics datasets based on PubMed publications.
PMID 41282419 · Comput Struct Biotechnol J · 2025
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83/100
Single-cell RNA-sequencing of circulating tumour cells: A practical guide to workflow and translational applications.
PMID 41053409 · Cancer Metastasis Rev · 2025
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No computation
Generative and integrative modeling for transcriptomics with formalin fixed paraffin embedded material.
PMID 41029822 · J Transl Med · 2025
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67/100
Tracing truth: dynamic temporal networks for multi-modal fake news detection.⚑
PMID 40989433 · PeerJ Comput Sci · 2025
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33/100
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The systematic assessment of completeness of public metadata accompanying omics studies in the Gene Expression Omnibus data repository.
PMID 40926267 · Genome Biol · 2025
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99/100
Enhanced Generalizability of RNA Secondary Structure Prediction via Convolutional Block Attention Network and Ensemble Learning.
PMID 40871599 · Molecules · 2025
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87/100
randPedPCA: rapid approximation of principal components from large pedigrees.
PMID 40877802 · Genet Sel Evol · 2025
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84/100
Chemist: A Domain-Specific Language by Chemists for Chemists.
PMID 40815845 · J Phys Chem A · 2025
89/100
Interpretable and integrative analysis of single-cell multiomics with scMKL.
PMID 40770488 · Commun Biol · 2025
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65/100
Artificial Intelligence Approach in Machine Learning-Based Modeling and Networking of the Coronavirus Pathogenesis Pathway.
PMID 40699865 · Curr Issues Mol Biol · 2025
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No data access
Improving genomic prediction accuracy for methane emission and feed efficiency in sheep: integrating rumen microbial PCA with host genomic variation using neura
PMID 40676527 · Genet Sel Evol · 2025
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85/100
scATD: a high-throughput and interpretable framework for single-cell cancer drug resistance prediction and biomarker identification.
PMID 40501071 · Brief Bioinform · 2025
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62/100
ChIP-seq Data Processing and Relative and Quantitative Signal Normalization for Saccharomyces cerevisiae.
PMID 40364978 · Bio Protoc · 2025
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100/100
Protocol for assessing regulatory elements in murine heart using an AAV9-based massively parallel reporter assay.
PMID 40252222 · STAR Protoc · 2025
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93/100
GeneSetCart: assembling, augmenting, combining, visualizing, and analyzing gene sets.⚑
PMID 40208796 · Gigascience · 2025
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76/100
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scSAMAC: saliency-adjusted masking induced attention contrastive learning for single-cell clustering.
PMID 40131310 · Brief Bioinform · 2025
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85/100
Statistical framework for calling allelic imbalance in high-throughput sequencing data.
PMID 39966391 · Nat Commun · 2025
L1
89/100
Single-Cell Hi-C Technologies and Computational Data Analysis.
PMID 39887949 · Adv Sci (Weinh) · 2025
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80/100
Revealing the critical state and identifying individualized dynamic network biomarker for type 2 diabetes through advanced analysis methods on individual basis.
PMID 39890881 · Sci Rep · 2025
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75/100
Multiomic machine learning on lactylation for molecular typing and prognosis of lung adenocarcinoma.
PMID 39856156 · Sci Rep · 2025
L1
83/100
Correcting scale distortion in RNA sequencing data.
PMID 39875825 · BMC Bioinformatics · 2025
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76/100
RummaGEO: Automatic mining of human and mouse gene sets from GEO.
PMID 39569206 · Patterns (N Y) · 2024
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63/100
Protocol for the generation of single-nuclei RNA-seq libraries and quantification of heterogeneous cell types activated during social interaction.
PMID 39423127 · STAR Protoc · 2024
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78/100
A platelet-related signature for predicting the prognosis and immunotherapy benefit in bladder cancer based on machine learning combinations.⚑
PMID 39280688 · Transl Androl Urol · 2024
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51/100
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Reducing language barriers, promoting information absorption, and communication using fanyi.
PMID 39039634 · Chin Med J (Engl) · 2024
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67/100
Analytical code sharing practices in biomedical research.
PMID 38983240 · PeerJ Comput Sci · 2024
L1
92/100
Forseti: a mechanistic and predictive model of the splicing status of scRNA-seq reads.
PMID 38940130 · Bioinformatics · 2024
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87/100
Detecting tipping points of complex diseases by network information entropy.
PMID 38960408 · Brief Bioinform · 2024
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78/100
SGCP: a spectral self-learning method for clustering genes in co-expression networks.⚑
PMID 38956463 · BMC Bioinformatics · 2024
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51/100
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DeepGSEA: explainable deep gene set enrichment analysis for single-cell transcriptomic data.
PMID 38950178 · Bioinformatics · 2024
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40/100
PHA4GE quality control contextual data tags: standardized annotations for sharing public health sequence datasets with known quality issues to facilitate testin
PMID 38860884 · Microb Genom · 2024
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75/100
SurvConvMixer: robust and interpretable cancer survival prediction based on ConvMixer using pathway-level gene expression images.
PMID 38539106 · BMC Bioinformatics · 2024
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77/100